RNA id: TU368565


Basic Information

Item Value
RNA id TU368565
length 215
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G311204
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19961101 ~ 19961315 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaggaatgactgtttatagctgctgtaacataagtgaacaggaactaagttgtctTCACaaaactaaatgtaactatgaaaggataaaaagtatgacgggtagttctttaataaataaaaaaaaattgtagtcgttgtggtataaaacacttcggcGTGTGCCgctactggaaaataatcattgtgttttattccgtacaataaaatagtttacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368245 lncRNA upstream 55335 19899878 ~ 19905766 (+) True G310905
TU368246 lncRNA upstream 55335 19899878 ~ 19905766 (+) False G310905
TU368220 lncRNA upstream 105818 19848467 ~ 19855283 (+) False si:dkey-264d12.5
XR_004580176.1 lncRNA upstream 112817 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA upstream 115554 19839421 ~ 19845547 (+) False LOC117599874
TU368568 lncRNA downstream 1199 19962514 ~ 19963668 (+) True G311207
TU368586 lncRNA downstream 34749 19996064 ~ 19996270 (+) True G311225
TU368581 lncRNA downstream 66581 20027896 ~ 20028312 (+) True G311220
TU368598 lncRNA downstream 75890 20037205 ~ 20056574 (+) True G311227
TU368604 lncRNA downstream 109658 20070973 ~ 20071359 (+) True G311232
XM_034313999.1 mRNA upstream 66681 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932462.2 mRNA upstream 92620 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA upstream 92620 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA upstream 92620 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_026933004.2 mRNA upstream 126672 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_026932696.2 mRNA downstream 43090 20004405 ~ 20022989 (+) True mmel1
XM_034314369.1 mRNA downstream 80024 20041339 ~ 20053146 (+) False slc45a1
XM_026932557.2 mRNA downstream 80024 20041339 ~ 20050611 (+) True slc45a1
XM_026932955.2 mRNA downstream 174352 20135667 ~ 20145354 (+) True errfi1a
XM_026932768.2 mRNA downstream 218593 20179908 ~ 20237403 (+) True pax7a
TU368156 other upstream 177188 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 177188 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 443942 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 873295 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1269087 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 909337 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile