RNA id: TU368568



Basic Information


Item Value
RNA id TU368568
length 1155
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G311207
representative True

Chromosome Information


Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19962514 ~ 19963668 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


tcaagatgtgatagTCTGGTAAAGTGTATTctagtaattggacaaactaacataattataaatattaggattatttttaatacttggacttgcagtcaatgactgcctgaagtctggaccccatggacatcaccaaatgctgagttttcTCCCTTGAGATGTTTTGCCAAGCCTTTACTGatgccaccttcagttgctgcttgtttgtgggtctttctgccttcggTTTTGTCGTCAGGaagagaaaagcagctcaactgggttgaggtcaggtgactgcctcggccatttaagaccattcaatttctttgccttaaaaagctcttgggttgctttcgcgctatgttttgtgtcattatcTATCTGtcctgtgaagcgccgtcctatcagttttgcagcacttgactgaatctgagcagaaagtacagcTCTATACGCTTCAGAATTcttcctgctacttctatcagcagtcacatcatcaaatacaccagtgacccagttccattggcccatgtcataacactgcctccacatgttttgATGTAGTATGCTTTGAAACATGAGCCTGTCTTTCTTcatattcttctcttcccatcattctggtacaagttaatcttgtttcatctgtccaaagaatcttgttcaaGAACTGTTTCCGAGTAAAATCTAATCtgttctttctgttcttgagtgttaccagcggtttgcattgtgaagtaaaccctctgtatttacattcaagAAGGCGTCTCCTGATTGTAGACTTAGATAATGATACGCCtgcctcctccagagtgttcttgacttggctagatgtttgaaggggtttttctttttaagaatgtagaAGAATGgagatttggccctcctaaagtttctgctatctctctgatagatctgttttattttttcagcctagtgatggcctccttcacttgcatcgacacctctttggacggcatattcagagttcccatgaacagctaccaaataaaaattcaacgcttggaatcaactccagaccttttatctccatatttcatgaaataacaaggaaacaggccacacctggccattacactgcttatcagtcaattttccaattacttttgagcttgtggaaatggagggactctaaaaaaaaaaaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU368565 lncRNA upstream 1199 19961101 ~ 19961315 (+) True G311204
TU368245 lncRNA upstream 56748 19899878 ~ 19905766 (+) True G310905
TU368246 lncRNA upstream 56748 19899878 ~ 19905766 (+) False G310905
TU368220 lncRNA upstream 107231 19848467 ~ 19855283 (+) False si:dkey-264d12.5
XR_004580176.1 lncRNA upstream 114230 19839421 ~ 19848284 (+) True LOC117599874
TU368586 lncRNA downstream 32396 19996064 ~ 19996270 (+) True G311225
TU368581 lncRNA downstream 64228 20027896 ~ 20028312 (+) True G311220
TU368598 lncRNA downstream 73537 20037205 ~ 20056574 (+) True G311227
TU368604 lncRNA downstream 107305 20070973 ~ 20071359 (+) True G311232
TU368619 lncRNA downstream 146293 20109961 ~ 20110224 (+) True G311246
XM_034313999.1 mRNA upstream 68094 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932462.2 mRNA upstream 94033 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA upstream 94033 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA upstream 94033 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_026933004.2 mRNA upstream 128085 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_026932696.2 mRNA downstream 40737 20004405 ~ 20022989 (+) True mmel1
XM_034314369.1 mRNA downstream 77671 20041339 ~ 20053146 (+) False slc45a1
XM_026932557.2 mRNA downstream 77671 20041339 ~ 20050611 (+) True slc45a1
XM_026932955.2 mRNA downstream 171999 20135667 ~ 20145354 (+) True errfi1a
XM_026932768.2 mRNA downstream 216240 20179908 ~ 20237403 (+) True pax7a
TU368156 other upstream 178601 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 178601 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 445355 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 874708 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1270500 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 906984 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile