RNA id: TU368619


Basic Information

Item Value
RNA id TU368619
length 264
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G311246
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20109961 ~ 20110224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGGTGTGTATTTCGCTGCACGACCAGCTGACACGCTTCCGTATGTTTGATATTGCGTCTCTGCAGATCGACCCACTTCACTCTGTCTGCTTCCCTCATGATGATAGTGGAAAAATTCTCAGGAAACCACTTGTCCTCAAGTGCACTCGTCCCTCTCCTCGTTCTTCCCTTCCCTGTTAGCATGACGGTGGTTTTATCCGTCATTTTCTGACGTACTCTGGCGCTGGCATGCATGCGCCCTATGACTCATAGGGTTCTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368604 lncRNA upstream 38602 20070973 ~ 20071359 (+) True G311232
TU368598 lncRNA upstream 53387 20037205 ~ 20056574 (+) True G311227
TU368581 lncRNA upstream 81649 20027896 ~ 20028312 (+) True G311220
TU368586 lncRNA upstream 113691 19996064 ~ 19996270 (+) True G311225
TU368568 lncRNA upstream 146293 19962514 ~ 19963668 (+) True G311207
TU368607 lncRNA downstream 9159 20119383 ~ 20177272 (+) False errfi1a
TU368791 lncRNA downstream 265789 20376013 ~ 20376698 (+) True G311395
TU368803 lncRNA downstream 285530 20395754 ~ 20396286 (+) True G311407
TU368810 lncRNA downstream 305360 20415584 ~ 20416179 (+) True G311414
TU368844 lncRNA downstream 362599 20472823 ~ 20473797 (+) True G311447
XM_034314369.1 mRNA upstream 56815 20041339 ~ 20053146 (+) False slc45a1
XM_026932557.2 mRNA upstream 59350 20041339 ~ 20050611 (+) True slc45a1
XM_026932696.2 mRNA upstream 86972 20004405 ~ 20022989 (+) True mmel1
XM_034313999.1 mRNA upstream 215541 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932461.2 mRNA upstream 241480 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932955.2 mRNA downstream 25443 20135667 ~ 20145354 (+) True errfi1a
XM_026932768.2 mRNA downstream 69684 20179908 ~ 20237403 (+) True pax7a
XM_026932769.2 mRNA downstream 69684 20179908 ~ 20237403 (+) False pax7a
XM_034314208.1 mRNA downstream 70591 20180815 ~ 20237403 (+) False pax7a
XM_026932422.2 mRNA downstream 168348 20278572 ~ 20288754 (+) True park7
TU368156 other upstream 326048 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 326048 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 592802 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1022155 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1417947 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 760428 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile