RNA id: TU368903


Basic Information

Item Value
RNA id TU368903
length 5790
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G311483
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20932678 ~ 20943629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTGAACTGTTTATGATTAATCCAGATTTTTATAGGTGAAAGTTTTTTCCATCTTCATTTGCTATTGGCCAAATATAGATCGTTTCAAGTGGATCACGTGCTTGTTTCCTCCAGTCATACATTTGGTTAGATCATGTCAGGGCTTTATTAATGGAAATGTTAAAACATGATAAGTTGCGCAACAGTGGCACTCGAAAGAAGGACCAATAGCGTCACCTGGTGATTAAGACTGTACAGGACAGGGGATTTCATTCTGCTACATTTAATTCCTTATAATCTTTTTGTTGATTTCACACCAACAGCAGAAAAATAGAGAAATCAGACAGACGTCATTAGGAGTCATAAGGACAGTTACCCATGAAATACTTTTGCTGTGTTTTAGTACAAGTGACTTTGTGTAAGACAATCAGATGCTAAAGAAGTTAAATTTAAAACACCCAATTTTCCATCACATTAAGAGCATCACTGTCTTAGACAACAAAACATCAGTccaaatactactactactactactaaataaTGTAAGTATTTGTTAAAGTTAAAACTAATTAATTAGAACATGGAGATTGTTGTAAATATCagaattttagtttttttttcgaTTGATTAAATTAATTTGATAAATTCGCGCACAGGTTCAGCATCCCGTTGCTGTAATTTGCGCTTTTTACTCTGAACATTTGTGCCCTCAATattgttcttcttttctcttggTTTTGCGTGTAAATCCAGCACAGGACCAAGGATAGTTTAGTGATAATTTAGACTTAGAGCTGTCTGGACTGTTCACAACCAAGCTAATGTGTGATTATTGTGATAAACGATATTTAATGAATTGAGAATTTTAAAGTTACTGAATTAGGTTCTAAAATACTAAACTGAACCGAGTTTTCCGAAAAGCATAAAATATCGTTTTACTCTCCCAACCTCAAGTGCTTAACGTTTGAGAAATGTGGCCCTGACCAACTACCTTTACATTTCAATAAGTTTCCGTTAAAGTTTTACTAAACAAATTTCACCTAATtctattaaaataacaaaatatagaaGCAGTGTGACATAATACGAGAATTTCTGGCggaattatattttaataacctTCAAATCTGCCACATACTTTTGTTTCCTGttcatttggcttttttttttttgctgtacaaGTGACTTCGTTAGGAATTTAACTCACTACCATAAGCTATGGttttaaatcattacattacagttttatatgcattaaatcattttagttGACTTGTTTTAAGACAGTTTTAATAAAGCCTTTATGCTGTTGTTgtattttggcttttttttaaattcgcCAAAATATGCATTATTGTCTATATCTGAACCTGAATCTGTTAGCAGGGAAggatcatttcattttcaactctcactttttgattttttttcttcctcatgcgTTTAAGGGTAAAGAAAAGCTTTCAGATGATTCTAGTGACACTCTAGTTTAAAACTCGTGCactgaatattttctgaatgaAAGGCACCGAGAGTTCTAGGCCTACTTGGTTAGgaaagtttttaatttatttataagtttattattataggttttttaaattaattttttgttattttgaaagTCTCTGTAACCTGAGCTCTCGTTGATGGTCCAAATCTCGAAATTCACTTCCATAAATAAAGCCAAAGCCCAGCACTGCACTGCTTTTAAACATGTCCATTTGTCCGATTTGGTGCTTCTTGGAGTCAGTGATATTTGTTTGTATATTAAGCATTTAATATCGCGAGGTTTTATACTGTATAGTTTATACACTTTTGTTACACTCCATTGCAATATTTTAAACCGGTTTCAAGCTGCTCTTTTGATCTACAATCTTGTAATCTAGAATGTAGTCACATTTTGTAAAGCCCGAATAACTCGCACAGTACTTGCTGAAATGCTATTTGTACAAATAATCCTAGTTCCAATAGTTTGTTAGccgattttttaaaaatatggaaaCAACATTTTAGCAAAACGTTTAAACTTCTGAGCGCTAGGTTACATTTCCAGCAACAAACTGGAAAACGCTCAAACCTGGTGTAATTTAGctaaagtttttatttgtttatttattttaaatattgtctTGTCAGCTTATTTATAGACGTTCTGTTGGCTATTTTTCATGGTTtcatgtaaacaggaaatttgGGCTCCTTGTTCGAATGAAGAGTTTAATTCTTAAAGATAAAATATAGGAAAATGTACATAATTATGACACATATGATGTTTGACTTTTTGAGAATCATTTCAGGAACTGTAGTAAGCGATGTGTTCAGGGGCTTATCATGATTTTCTGAATCTAATATTGCTAATGCTGGTGCAATATCAAATAACATACAAGTGACACAGATTAGACTCGTTGAGGATACatgttgatgtttatttaaaaatgataccAGTTCAGTAGGTAGTTTTATATAACCAAACATTTGCTTGTATGCATGGACGAGACCCACAGTTATAGTCCATTATTTTTTGTCTCATGGCGTTTAACAACTAAGGCAAGGTCATTTCATATAAACATACTTTCCATATATGCAAATGTATACATAATTATGAATTGTCAGTTTCCGCTCAGATTTTAATCCGTAACAAATTCGGTAGGTAATGTCAACAGGTAGCTTTATATAACCGTACTTTTCTATATGATGAATACGTGGAGTATAGATATACGTGGAAAAGCCACAATTATAGCGCATAACAGTTTGTGAGGCAAAAGTCAACAGGTAGTTTGATTGATAGGTAGTTTTTAACCATATTTTTCAATATACATATCTGTATGAAATATCACACATAATTATGGCACATGGGTTTTTTTTAGGTAGTTTCATGTATATACAACGTGcctgatgcaaaaaaaaacaacaacaaaaaaaccactACTCCTTAGTGTCACTCGTGGATCCTTCTGTAACCTCTTTCCCTGTTTCCTGTTCGTGTAGAGTGGAGGTCAGattgttctcttttttccatttcatcctGCGGTTCTGAAACCAGATTTTAATTTGTCGCTCGGTTAGACACAGCGTGTTGGCGATCTCGATTCTTCTTCTCCGTGTTAAATATCGGTTGTAGTGAAACTCTTTCTCCAGCTCCAGCGTTTGGTATCGAGAATAAATCTGACGACCTCTGCGCCTGTCCGAGCCATAACCAACAcctgaggagaagaaaagataAAGTGATTAACTTCAGGAGGAACAATAATGCTTTAGGCTCTGGACAATTCTCTCCTGTTTATGGTGTTTTGTTCAACACTGTGATTTTACTAtgaactcacacacatgctaacTTATACATCACTACCTCACAACTTCTACACGCACACCACAACATGTCTGAGAttatctaaaatatatttagtttGTGACTGAACATGTAGCAACTCTGAACTTATTTTTAATACCCAGTGAGAGTACTGAACAAACCTTTAACTTAAACTCAGTTCTGCTGAAATTGGACATGACGAGATCATTATTCAGGCTtttcacttttgtttgttttgagcaTAAACATAAGCAATAAAATTTCCCTGATAAACACTCTTTTCTACAAACAGCGCCATAAAACTTCCCTCttttatggttttgttttgaaagtTTTTGCTGGTTATTTTTTGACCAAATGGGATTTATTTCCCTGAGTGATAAGACATTTACTGCCAGAGCGACAGTGGAGCTCTGTCCAGTGCTTTATGGggcaataaaacaataaaaacccaaATTTCTAGTTgcagtagtaaaaaaaaaaaggctgtataGTCCATGCAGCTCAAACTGTGTCTctttaaatcataaataaataaataaatcttgtaAACTCACCGCTGTGCGAGTTCATTCTCTGCATCCAGGGATAAATCTGTATGCTGCCGCTTTTTGGATCCTGGCACGCGCTTCTGCACTGCTCTAACGACGGTGAAGTTGTGAAGTCCTGCGCGAAGCTTTGTCTGCAACCGGAAATCGCGTCTTTGTCCGAGTAAAACGCGTTGGATCCGTAGTCGTACGGTGCGCGGCTCGCGCCGAACATCACGTCTTCCTGCGGCGGGTAGAAGGGCGCGCGGTACATCCGGTTAGCGGCGCCATAGGACGACGGGAAATGGCGGACCACGGGGTCGTAGGTGCTCGAGTTGGACAGGGCCACGTTGGGCAAAACCTCGTGAGCTCCGGTTAAGTGGCACGAGAGGGACGAGTTGGTGAAATAGGAATTCATACCGtccactctcactctctctctctctctctctcactcactccaaacctctcttcttctctttccctccctctcctactttctctgatctctctctctttctccctctttctctattttactccctccctccttctttccctccctcactcacgctttctttctttcgttctttttctcagtattcctttatttcttctttttttaaatttttttttattaatcccTCTCTTTTAATGCCACTGCTGTATGATGTCTAATTTATTTCGGGACACCAATAAAAGACTGCACGCGCGCAGCTCAACGTGTTTTCAAAGCATCCTTTCTAAGATGGACAGAGATGACTGGGTCAGCTGACCACACTTCATCCAATGAAAGACTTGattatggagagagagaaagagagagagagaggaaaaaaaagaaatgaagtcGAAATTTTCGACCTTCTCTCCCATAACATCAGATTATACAGCTTTTTGAAGGTGACATAttattcagtctctctctctctctctctctctctctctctcacaccacccacccacacacacacatagatagatagatagatagatagatagatgaaaatAAAGCTATTGAATCATCTTCTACACACCTGAATGACGATCAGAAATGAAAACGCTAAAAGGTCATAATTCCATTTGAACTGAACATATTTCACAGATCATAGAAAAGTCTGTTATCTCTCTAAAAATAGAAAGATATGAAATGTGATCACACTTGATTAGGTCCAGTATTATTGGTTATTATTGCTAGTGCAGGAAATCCTTTCAAAGCGAACCATTACGAATGTGATGCATttcataaaacagtaaaatgctGAACGAAAacattgaatattttttaaaaatctttattttctgCACTTATTAATATTTCAGGACGCTGGTATCGGTCATGCTTTACTGTAGAATAATacatgctttcatttcatttcatgtttctCATATTGAAATCTGACTCAgtgttattaaatacaaatctgCATCCCTACATCAACAACTATTCGTTGTTTAATAACGGGAATGCGAAAAATAAACCtaactttttattatattttcagtggataatttacaataaaaatatacatacgtTAGATGACCATAAGCTAATGCATCTAACATCTTGTATGAGTCTGTATCGTAAAGTGTGCATGCAGTAAACCAGTAAGAACAACAGAATGGCGACTTACCGACACTCACAAGCTCATCATGGCACCACCTGAAGTCCTTTCATTCAGATATTCCGTATTTTGTAGAATCTGTTTTCACAAGAGTCAGTGCTGGAAATTCTGTACACTATAACCCCTGATCAGTAAATGAATCTAGCCtttctggtaaaaaaaaatgcaatgaagctgaggaagaagagcaggaaaaccaaaaaacagcccactttctcttcttttcttttattatttaatatcaaGCTACAATAAGAACTGCATGCTCCTCTTTTAGAGATTGAGAGTGAATCTGAGTCACCAAACCAAACGCCAACAGCATAAAGTTCATGTTCACGGAGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368906 lncRNA upstream 47837 20882446 ~ 20884841 (+) True G311486
TU368910 lncRNA upstream 79163 20807858 ~ 20853515 (+) False znf740a
TU368909 lncRNA upstream 89223 20842278 ~ 20843455 (+) True G311489
TU368929 lncRNA upstream 150318 20781762 ~ 20782360 (+) True G311505
TU368924 lncRNA upstream 162850 20767626 ~ 20769828 (+) True G311504
TU369035 lncRNA downstream 4692 20948321 ~ 20951538 (+) True G311591
TU369043 lncRNA downstream 24086 20967715 ~ 20968865 (+) True G311599
XR_003403815.2 lncRNA downstream 62721 21006350 ~ 21012460 (+) False LOC113538073
XR_003403816.2 lncRNA downstream 66139 21009768 ~ 21012460 (+) True LOC113538073
TU369109 lncRNA downstream 207169 21150798 ~ 21155101 (+) True G311649
XM_026932826.2 mRNA upstream 31267 20896980 ~ 20901411 (+) True smug1
XM_034314359.1 mRNA upstream 31267 20899115 ~ 20901411 (+) False smug1
XM_034314334.1 mRNA upstream 54271 20870652 ~ 20878407 (+) True hnrnpa1a
XM_034314163.1 mRNA upstream 71951 20831856 ~ 20860727 (+) False znf740a
XM_034314335.1 mRNA downstream 89494 21033123 ~ 21046577 (+) True calcoco1b
XM_034314468.1 mRNA downstream 169805 21113434 ~ 21135134 (+) True LOC113537842
XM_034314469.1 mRNA downstream 169805 21113434 ~ 21135134 (+) False LOC113537842
XM_034314489.1 mRNA downstream 194180 21137809 ~ 21149284 (+) True faim2b
XM_034314304.1 mRNA downstream 267623 21211252 ~ 21371670 (+) True lrp1aa
XR_004580241.1 other upstream 50313 20870652 ~ 20882365 (+) False hnrnpa1a
TU368156 other upstream 1148765 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1148765 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1415519 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1844872 19087025 ~ 19087806 (+) True G310681

Expression Profile