RNA id: TU368906


Basic Information

Item Value
RNA id TU368906
length 2396
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G311486
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20882446 ~ 20884841 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGATCTTCATTTTATAACCTGATTCTCTTGAACAGAATGAATGTCTAGAAATGTTAGAAATCCAGAGGAAAACTAAGATATGGTGAGAAATGTTTCTTCCTCCTCTGTTCTTAACttcttttattccttcttttATTTGTCCGAGGCTTCTGCAGACTTATGAGCTCCATAAAACAGAAGATAACGTGGTTTTATCTAACTCTCAGCTGAAATCCATCATACTCGATCCTGACGGCTGTGATGAAGGAGGAAGTTTGAGCTTCTGTCAGATTTAGAGTTAACAAATCCTGTACACTGATTACAGGTTTTATGGGTAATTCAGGATGGGTAAGAGATTGAGCTTTATGTTTGGTTTAAGGGAAATTCTGACATTTCTGTATGCAAATTGCGAAGTGATGAATAAACTAGAGACGCAACTGAATAAGAGATGAAGAGGAAATAAAACGGCGCAGGAAACTGACTAAAATACAAAGTGTAGGtttttataaaatgaatttCCATCCTTTATGTCATACACACCACCTCCTAATTCTCCATGAAACTACTTTAAAGCTAATTCTAtcttaataaataagtaatgtgGCTATGTTTAATTACGTTTTGTACCAAGGCCTGAGACACCCAGCTGAACATGTCCAACGTTTTGCATATCTCCATGCATGTATGCTTCATTGAGATTGTTTTGCTAAAACCAGAGATGTGTGAAGAGTAGAAATTGGAACAAGCGGCTTAATTCCACTTAGTCATCTTATACCTAAACAAAAACTCTGGTTTGTTCAAGTTCTACAGTGGGCTAGGTCATGAAAAGATTTAAATCTCAAATGTTGGTATTTAAattatgcaaataaattaaaaaaacaagaactgaTACAAAGGGCCATCAATACAGAgaataatatttgtttaaaaatacagcacctTTAACACGAcattgtcccaaagcagctttacagaaatctggatgcaGATTTTGTCCCTGTTGAACAATTCGGAGGTGACAGTGACGAGGAAAAGACACGCAAAATGGAAGCCGTGCTCTTCCGGGTGACGCCGGATATTGGGAATGAGTGTGTTTACGGGATCTTCAGTATGAGCAGGTGGTGAATGAGCAACAaggcagtctttatgattacagcagcagctctgcagAATCCAGGtgacattaaacactgaagctGGAGTgagactaaaaataaaactgagaaTAAACTGTTATTGGGAAGTGTAAAAATCTTAGTGTGTCCATGTGATACCAGTTATagcagcagaaggtgagtcacAGTGCAGAAGTAGATCATCAGGATGaatgaggaagtgtgtgaggaGCAGGCAGCATGAGTACACGTTTAGCTCGGCCgagagagaacagattattaTCCTCGTGTCCTCTCGGAGATTTTCTTCATCACTGTCACCTCCGGCTTGCTCTTTACGGATTAAAATccacatccagatttctgtaaagctgctttgtgactattCACTTTGCAAAGTTTATCAAAACTATAGCCATTatgttgttcatttttaattaactttaaagattgttgtgtgtgaattcagaacctgacagttcctcagcctcagctacatcactccaatTCACTGATCTCGACCAGAGACATGTGGGACTGGTTTTTAAAATCTCGATCACAcacttattattcttatttgtaCCTGCTCACTATATATTCTAACAAATGTAGCTGGTagtgtttcccaaaatataaacaaactagcagcCTAActtaaaccccagtgaccctgaccaggcagttactaaggaagagtgaatgaatgctgtaaatgcatcacacagcgctgttaatattcacattaatgaacatggtctttctttgtcctgcaagcttcatatctgacagcttGTTTTTGTTGGCTCTGGTTTAACAATGCCCTCTGAACCTATCCAAATCTTTATGAAAAACAACCTGAATAGTGCACCTTCTATTAGTATCTGTActtgtatctgtttagagcacattcatctgttcattctgaataatatattcatatttagttatattactAACACCTGCGAACCCCAGAGATTTGCACCTTTACCTAAAATAACATGACTAGGTTACTTTTTATTGATCTGAATTGTTCCAGTGTGCAGAATTTACAGCCTCGTGAATGTATTTGCTCTGCAGTTCTTCATACTGAAGGGATTTGATACAACCACCAAAATACAACCACGACACTACACCCTGGCATGCGTGTGGCTACACCTCCGGACTCTTCCActtctgtttgtttctcagtTTTAGATAGATATGTACTCATCATCATGAACTTGTTTATCTTGGGTAGCTTCAAGGTTCCATCTCAGACCACAAGGAACCCTGTGACCACCAGAGCAACACTTGGACCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368910 lncRNA upstream 28931 20807858 ~ 20853515 (+) False znf740a
TU368909 lncRNA upstream 38991 20842278 ~ 20843455 (+) True G311489
TU368938 lncRNA upstream 77522 20767078 ~ 20804924 (+) True G311508
TU368929 lncRNA upstream 100086 20781762 ~ 20782360 (+) True G311505
TU368924 lncRNA upstream 112618 20767626 ~ 20769828 (+) True G311504
TU368908 lncRNA downstream 18471 20903312 ~ 20937881 (+) True G311488
TU368902 lncRNA downstream 42162 20927003 ~ 20983511 (+) True G311482
TU368903 lncRNA downstream 47837 20932678 ~ 20943629 (+) True G311483
TU369035 lncRNA downstream 63480 20948321 ~ 20951538 (+) True G311591
TU369043 lncRNA downstream 82874 20967715 ~ 20968865 (+) True G311599
XM_034314334.1 mRNA upstream 4039 20870652 ~ 20878407 (+) True hnrnpa1a
XM_034314152.1 mRNA upstream 21719 20831856 ~ 20860727 (+) True znf740a
XM_034314156.1 mRNA upstream 21719 20831856 ~ 20860727 (+) False znf740a
XM_034314164.1 mRNA upstream 21719 20831856 ~ 20860727 (+) False znf740a
XM_034314158.1 mRNA upstream 21719 20831856 ~ 20860727 (+) False znf740a
XM_026932826.2 mRNA downstream 12139 20896980 ~ 20901411 (+) True smug1
XM_034314359.1 mRNA downstream 14274 20899115 ~ 20901411 (+) False smug1
XM_034314335.1 mRNA downstream 148282 21033123 ~ 21046577 (+) True calcoco1b
XM_034314468.1 mRNA downstream 228593 21113434 ~ 21135134 (+) True LOC113537842
XM_034314469.1 mRNA downstream 228593 21113434 ~ 21135134 (+) False LOC113537842
XR_004580241.1 other upstream 81 20870652 ~ 20882365 (+) False hnrnpa1a
TU368156 other upstream 1098533 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1098533 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1365287 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1794640 19087025 ~ 19087806 (+) True G310681

Expression Profile