RNA id: TU368908



Basic Information


Item Value
RNA id TU368908
length 404
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G311488
representative True

Chromosome Information


Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20903312 ~ 20937881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


cacacacccacacacacacacacacacacacacacacacacacacacacagagcatctTACAAAGCCTTTTTTCCTTGGTCTGATCTTACACATTTCCACCATATTTCTTAATTTTCTCCTCCGTTAATAAAAAATGGCATCAGTCTCTTTCAGTTCTCGATAAAATGTCGATTCTCTTTAATGTAGCCTTATCATTTTGACTAACCTTCATGTTCATCTTTCATTTATCACACTGATAGCATCATGTAATAATGCACAGCTATATTAATATACACAAATGTTGAGCTTCGTCTGTTACtgtagaaaagagaaaagggcggacagtttttaataaagtaataaatcatGTTACTAATGATGAACAAGATAATAAATACTGCAGACGATATAAGAGAGCGAGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU368906 lncRNA upstream 18471 20882446 ~ 20884841 (+) True G311486
TU368910 lncRNA upstream 49797 20807858 ~ 20853515 (+) False znf740a
TU368909 lncRNA upstream 59857 20842278 ~ 20843455 (+) True G311489
TU368938 lncRNA upstream 98388 20767078 ~ 20804924 (+) True G311508
TU368929 lncRNA upstream 120952 20781762 ~ 20782360 (+) True G311505
TU369035 lncRNA downstream 10440 20948321 ~ 20951538 (+) True G311591
TU369043 lncRNA downstream 29834 20967715 ~ 20968865 (+) True G311599
XR_003403815.2 lncRNA downstream 68469 21006350 ~ 21012460 (+) False LOC113538073
XR_003403816.2 lncRNA downstream 71887 21009768 ~ 21012460 (+) True LOC113538073
TU369109 lncRNA downstream 212917 21150798 ~ 21155101 (+) True G311649
XM_026932826.2 mRNA upstream 1901 20896980 ~ 20901411 (+) True smug1
XM_034314359.1 mRNA upstream 1901 20899115 ~ 20901411 (+) False smug1
XM_034314334.1 mRNA upstream 24905 20870652 ~ 20878407 (+) True hnrnpa1a
XM_034314167.1 mRNA upstream 42585 20831856 ~ 20860727 (+) False znf740a
XM_034314335.1 mRNA downstream 95242 21033123 ~ 21046577 (+) True calcoco1b
XM_034314468.1 mRNA downstream 175553 21113434 ~ 21135134 (+) True LOC113537842
XM_034314469.1 mRNA downstream 175553 21113434 ~ 21135134 (+) False LOC113537842
XM_034314489.1 mRNA downstream 199928 21137809 ~ 21149284 (+) True faim2b
XM_034314304.1 mRNA downstream 273371 21211252 ~ 21371670 (+) True lrp1aa
XR_004580241.1 other upstream 20947 20870652 ~ 20882365 (+) False hnrnpa1a
TU368156 other upstream 1119399 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1119399 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1386153 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1815506 19087025 ~ 19087806 (+) True G310681

Expression Profile