RNA id: XM_034314152.1


Basic Information

Item Value
RNA id XM_034314152.1
length 4548
RNA type mRNA
GC content 0.45
exon number 17
gene id znf740a
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20807858 ~ 20860727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTCCGGGTTTGCGTCGAGTGCGCGTTCTCGGCGAGCACTTCCGGTGCTGTTTCCTGTGTTTGTAAACTGTAGCTCGCGCTAGCTGATGTGGACGCTGCGATAAGGAGCCAGTTTTTTTTAGCCACATACCAAAAGCCTAGAAGgacAGGACGAAAACCGGTGCCAGATGATAgcagtgggcgtgtcctatTGTCTATTGCATCATCCTGAGTGACAGCTCCTGGCTCCTCCCCTTGTCCCTGTCCTCTTCTGTGATGTCACACATACCAACCACCTCGGTCCGTGACCATATGAAATGGgcggGGCTGCTCGGATGTGAAGCCGTCCTCTCCAGCATGGCTCTGATGCAGGCCAGCACCATTTCTGCTCCAAAGAAGATGATGACATCACTGGCTCCGCCCCCTGTTCCGGGTTCCACTCAGAGGGACCCGCAGGGACACATGGGCTTAACGGCGGCCATGACCTGTCCTCCTCTGcttgtCCGTAAAGAAGGCGACATTCACGCCCCTCGCCTGCTGGACGAGAAGGAAATGCGACCGAACGAGGACATgcagctgaagaagaagaacaggaagTCGGGAACGCCCTGTAAAGTCCGAGAGCAGGAGGGGAAAGGAGGGAAGGCTGTCGTGGTGGACGAGAACGGGAATTGTCCGCTTTCCAAAGTGCAGAAGAACTTCATCTGCGATCACTGCTACGGCGCCTTCAGAAGCGGCTATCATCTGAAACGACACATTCTCATTCACACCGGGGAGAAGCCATTTGCTTGTGCCATATGTGACATGAGGTTTATTCAGCGTTACCACTTGGAGAGACACAGCCTCACTCATACTGGGGTGAAACCGTATGCTTGCACCATGTGTGACATGCGGTTTTTCCAACGTTACCACCTTCAGAGACACAGCCTCATACATACGGGGGTGAAGCCCTACGCTTGCTCCATGTGCGACAGGCGTTTTTTCCAACGCTACCACCTGCAGAGACACAGCCTCACTCATACGGGGGTGAAGCCGTATGCTTGTTCCATGTGTGACATGAAGTTTTTTCAGCGTTACCACCTGCAGAGACACAGCCTAACCCATACGGGGGTGAAGCCATATGCTTGCTCCATGTGCCATATGAGGTTTTTTCAGCGTTGTCACCTTCAACGACACACTCTCACCCACACGGGGGTGAAGCCATTTGCTTGCACCATGTGTGATATGAGGTTTTTTCAACGCTACCACCTCCAGAGACACAGCATCACCCATACGGGAGTGAAGCCTTACGCTTGTTCCATGTGTGACATGCGTTTTTTCCACCGTTACCACCTGCAGAGACACAGCCTCACTCACACGGGGGTGAAGCCCTATGCGTGTAACATGTGTGACATGCGTTTTTTCCAACGCTACCACCTGCAGAGACACAGCCTGACCCATACGGGGGTGAAGCCGTACGCTTGCTCGATGTGCGACATGAGGTTTTTTCAACGTTACCACCTCCAGAGACACAGCCTCACTCATACGGGGGTGAAGCCGTACGCTTGCTCCATGTGTGACATGAGATTTTTCCAGCGTTACCACTTGGAAAGACACAGCCTCACTCACACGGgtgagaAGCCGTTTGCGTGTGATATGTGCGACATGCGCTTCATCCAGAGATATCACCTGGAGAGACACAAGCGCGTACACAGCGGCGAGAAACCGTATCAGTGTGAGCGATGCCAACAGaATTTCTCAAGAACAGACCGGCTGCTCAGACACAGGCGGCTGTGCCAGGGAAGGGGTGTGGCTAAAGTGGAGGCTACACCCTGCTGCGAGCCCCGCCCATTTTCTCAAGACCCACTCCCGGCTCCGCCCCCAGCTCCGCCCAACACCTGGAGTCGACTCGCAGTCTGACATTCCATCGCATTAACCTGCACGGAATCGGAAAAAAAAACTACGTACACACTCCTGGCTCTGTGACTGCCGCCTCGCACAgtggtggagaaaaaaataaataaaacaagactgATGTTACAGAAGGCGAAAGCGAACGAATGAAACGCTTCTTTACCTTATTTGTGCTATCGATTATTTTAAGAGAGGGACCTGttttggagggtttttttttttttttatatacgtttaaacaatttattcactttttctttttttaattttgtaacagcgattcagccattttgttgttttgtggcTGACGGCAAGAAAAGTGGCTCGATGGATGCGATCGTGATGAAACAGCATTTCACAAAACTATCTGCGGGTTTAGCGACGACGCGTTTTGTCAAGAAGTCGACAAATTAAAATGTCGACAAAAGACGTTTCGTGCAACGTGAGCTGCGTTTCGTCTCCAGATTTACAGAGTTGGGGATTTacgaagatttttttttttttctggatcaGTCTCCAGATTTCGTACGTTCATATTGTTATTCTTCTCCGATTTAACTGCTCATGCTTGAtatcagtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaataaataactacGTTAACTGAGTTTTTACTGTAACACTCCTCTCCACATACACACTCGCATTACTGCTACGTAACGTGCTAGTTAGCCATAACGTATGAATCATGATGGTGAGCAAATTGAAACGTTTTAAGGTCAGACTTCAGAAGTTCTTTGCTAATCGATGCTAGTCAACTGATTCTGGGGCCAGGGAGTGTTTTTACGAGCAACGCTGCGCTTCCTTCGATCATCGGATCGCTggcttaaaaatgaaaatacattttatttccctacacatttcagtttttcatcttttcacGGCGCAAAAAATCTCATCGTCGACGACGGCGTTGTTCTGGACGTGTTGCTATTTGAAGGAAGGAAGGTTTGTTAGCAATGAGCCGGTTTCCAGTTCTTCATCTTTATTTAGCAATAATACTGATAATATTCGAAGTCCTGATCAACAAGTTGAGATGGTCACGCTGTTGCCGTGGTGATACGACGAAACCCCTGACATCGATTCCAGTCCTGCGTCTTTTTAGTGCTGGAATAAAAGCGATATTTGGCTCACAGACGGATGTTCCGGGGTTGAAACGGCGGCGCGGTTCCACGCTGGGCGCCAAGTCAGCGTCAGAGCCGTCGTCAAGACTCTTAACTCCAAATCGCTTCGTCCAAACACACAGTTtccctcagtgtgaaatataATCTACAGGTTTACACGTTTAAAGACTCTGTAACCTTCACGAGTGATGCACATCCTTTTGCGCTTTACTGCGACGTCGCCGCTTCCTGTCcgagtttgtgttttttttcatcactaTAACTCTCTATCTTGCTTAATGGATATCGTGCTGAAAGATCTCTTAGAGTAATAACACAGTGACTACAAAGACTACGCATCCCATCATGCATCTGTTCACAGACTGACCGCCTTCAGCAGGAAATGGAAATACGGAGCGACTTCCTGGAACTGTTTTCTGTGAAGCAGAAAGACTGAAGGTTCATGACATGACTATATTATTCAGAAATTATTTACAGCTCTGTATCATGCTTTAATTGCAGTTTGTACCTTgcttttgtttagtttttgtcctgttttgtGTACGTGTTGGTCAATATTAACACACTGATATAACACACAGTCCTTCCTGACaagatctggcaacccggtGCCTGGTGAGGACGGATCGGGAACTAGGCTTGTGCcgagatttgatttgatttgatttttaaaaaaaaaaaaaaaaaaaaaaacattgtttaaaaaaaaaaaatgaaataatctgGAAACTGTTTTCCGCAGGTCGGAGATGACAGAGTGATGAGAAAATACTCTACAtcgtttttttatttttaaatgctaaagaTACTCCATGATAACAATACTGTGTTAAATATCGTGATGTTTCGTGTCACTGATTATCGGCACATTCCTATTAACAACACAAGCCGCTTATTTTTCTCActgattatatttcatttatgtttcatgttataaaaatatataaaataatggaCTACAACAGTTTTAGTTCTGTAGCaacatgctgtgtatttttaatattttttatttctaatataaatttaaaacactggagtgaaaaaacaaactagactttttttaattttctttttggttttttttttgtttgttctgatATTAAACATAGCGTGTAGTTGTTTAGACAAAGCCGTCTCTTCGGAACCAAACGATTTCCTCACGCTGCCTCCGTAACGTTCATGtagggattttaaaaaaaaaataatagaaacgTTTCCCAGCCCGGTGTTTTAGTGAATTCTGTTTAGAAATATTAGAGAAGAAAGAAACTGCACCAGTCGTAGCTAACAGTAGTTCTGTTCTCTTGCATGTCCTGGCAGTtatcactgtaaaaaataaactttatattgatttttgttctttaaaaaaaaaaagacatgtatTGATGATTAATGTAAAATGAATCCAGACCACCTCGTGATCCGACTTTGTTGTGTGCAGTGAGAAGAGGGGCTTTCATTACACCGAAATAAAATCTCTCAAacgaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368938 lncRNA upstream 26932 20767078 ~ 20804924 (+) True G311508
TU368929 lncRNA upstream 49496 20781762 ~ 20782360 (+) True G311505
TU368924 lncRNA upstream 62028 20767626 ~ 20769828 (+) True G311504
TU368933 lncRNA upstream 141116 20685167 ~ 20690740 (+) True G311506
TU368936 lncRNA upstream 146787 20682831 ~ 20685069 (+) True G311507
TU368906 lncRNA downstream 21719 20882446 ~ 20884841 (+) True G311486
TU368908 lncRNA downstream 42585 20903312 ~ 20937881 (+) True G311488
TU368902 lncRNA downstream 66276 20927003 ~ 20983511 (+) True G311482
TU368903 lncRNA downstream 71951 20932678 ~ 20943629 (+) True G311483
TU369035 lncRNA downstream 87594 20948321 ~ 20951538 (+) True G311591
XM_026932838.2 mRNA upstream 170167 20654185 ~ 20661689 (+) True slc2a10
XM_026932837.2 mRNA upstream 170167 20654185 ~ 20661689 (+) False slc2a10
XM_026932903.2 mRNA upstream 181683 20633750 ~ 20650173 (+) True si:ch73-267c23.10
XM_026932496.2 mRNA upstream 210617 20618291 ~ 20621239 (+) True LOC113537838
XM_026932980.2 mRNA upstream 228792 20596752 ~ 20603064 (+) True LOC113538122
XM_034314334.1 mRNA downstream 9925 20870652 ~ 20878407 (+) True hnrnpa1a
XM_026932826.2 mRNA downstream 36253 20896980 ~ 20901411 (+) True smug1
XM_034314359.1 mRNA downstream 38388 20899115 ~ 20901411 (+) False smug1
XM_034314335.1 mRNA downstream 172396 21033123 ~ 21046577 (+) True calcoco1b
XM_034314468.1 mRNA downstream 252707 21113434 ~ 21135134 (+) True LOC113537842
TU368156 other upstream 1047943 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1047943 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1314697 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1744050 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 2139842 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 9925 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile