RNA id: TU368938


Basic Information

Item Value
RNA id TU368938
length 271
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G311508
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20767078 ~ 20804924 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatttattaaagccTTACACTTCACCAAGGTGTCTTACATTTTAAGGTAAACCTTTGTTTGGTCTCGTCATAAAGGAcagaatataaaacatttgcataaaaatccgaatcattaacattaaatgttaagACGGATCATTAAGACAAAAATCGAGAGGCACTTTGCTGGGCTTCAGACGTAAAAGACGACCAGATGATAATCCCGTTAACATGATAGCAtaattaaaagtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368933 lncRNA upstream 76338 20685167 ~ 20690740 (+) True G311506
TU368936 lncRNA upstream 82009 20682831 ~ 20685069 (+) True G311507
TU368955 lncRNA upstream 98805 20666267 ~ 20668273 (+) True G311516
TU368953 lncRNA upstream 101333 20662768 ~ 20665745 (+) True G311515
TU368841 lncRNA upstream 183483 20579953 ~ 20583595 (+) True G311444
TU368910 lncRNA downstream 2934 20807858 ~ 20853515 (+) False znf740a
TU368909 lncRNA downstream 37354 20842278 ~ 20843455 (+) True G311489
TU368906 lncRNA downstream 77522 20882446 ~ 20884841 (+) True G311486
TU368908 lncRNA downstream 98388 20903312 ~ 20937881 (+) True G311488
TU368902 lncRNA downstream 122079 20927003 ~ 20983511 (+) True G311482
XM_026932838.2 mRNA upstream 105389 20654185 ~ 20661689 (+) True slc2a10
XM_026932837.2 mRNA upstream 105389 20654185 ~ 20661689 (+) False slc2a10
XM_026932903.2 mRNA upstream 116905 20633750 ~ 20650173 (+) True si:ch73-267c23.10
XM_026932496.2 mRNA upstream 145839 20618291 ~ 20621239 (+) True LOC113537838
XM_026932980.2 mRNA upstream 164014 20596752 ~ 20603064 (+) True LOC113538122
XM_034314152.1 mRNA downstream 26932 20831856 ~ 20860727 (+) True znf740a
XM_034314156.1 mRNA downstream 26932 20831856 ~ 20860727 (+) False znf740a
XM_034314164.1 mRNA downstream 26932 20831856 ~ 20860727 (+) False znf740a
XM_034314158.1 mRNA downstream 26932 20831856 ~ 20860727 (+) False znf740a
XM_034314165.1 mRNA downstream 26932 20831856 ~ 20860727 (+) False znf740a
TU368156 other upstream 983165 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 983165 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1249919 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1679272 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 2075064 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 65728 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile