RNA id: TU369497


Basic Information

Item Value
RNA id TU369497
length 1209
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G311946
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21377860 ~ 21391093 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATTCTTTCAAGTGCCTTGGACACTATCTCAGTGGAGGAAGCATCTTTAAGATCACAGGTGACTGCTGATGTAACTACCTTTTGGTAGAGATGAGTTAAGGCTCTGAGGGCGTGAGCTTCGAGATTGACCTGATGAGTTCCTCTGGACCGTGCTGACACCTTAACCGAGCCGTGGACAGGTTCAGCATCAAACTGAACTCCATATTTATTTTGGATCTCAGAAATCTGTTTCTCAAACGCAATCTTCAGCAGTTGCCAGTGTGCCACATCCATCTCAGCTGCAGCTTGAGTGTCCTTGATGTCCATGTCCAAGTTCTTTGGGGTCTGCACTGAAGTCCTATTGCTAGATGTCTCCATGTTATGTGACTCTCTGTGGCTAAATGGTGTTGCTAGATCATCACCAGGTTCCAATTTTATCCGCTTCTCAACCACTGATGTTATTTCTCCTGGTCCAAACAGCAGGTATTCATTTGCTGACATGCTTAGCATGATCCTGTGCTCTTCATTTGGAATATTACGCAGTGTCTCTTTCATGATGTCagactgcatgtgtgtttgagggaCAGAAACAGATTTGAGATTCTTTGTAGTATTCTGGACAAGAGTAGAAAAGGCCTGAGTAGCTTTGCTGAAAGAATCACTCTCACTCTTCACCATAGCTTTCGCAGCAGAGAGTGAAAGACgtgtttctgcatttattttaactCCAAACACATTCTCAAATTGTTCCAGCTCCTTCCTGTAAGCTTGACTCAGGTACCAGTATAGAAAGGGAGGGACAGTAAAAGCATCAGAAGCTCCAGTCATCTCATTAGAAGCAGCTCCTGCATCCTTCATGAGCTCAGGTGGGGTTGTTTCTGTAGCAGTCACAttaactCCAAACTCATTCTCAAATTGTTCCAGCTCCTTCCTGTAAGCTTGACTCAGGTACCAGTATAGAAAGGGAGGGACAGTAAAAGCATCAGAAGCTCCAGTCATCTCATTAGAAGCAGCTCCTGCATCCTTCATGAGCTCAGGTGGGGTTGTTTCTGTAGCAGTCACAGCTGTCTCATGCATGTTCTCCTAATAAATATGgaaatacacatttatacaaTATTACTGATAGCCAAATTATACAACTCGCATTATAacgtacagtcaggtccataaatattgggacatcgacacaattctaacatttttggctctatacaccaccacaatggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369128 lncRNA upstream 186231 21191168 ~ 21191629 (+) True G311665
TU369118 lncRNA upstream 192821 21166980 ~ 21185039 (+) True LOC117599907
XR_004580235.1 lncRNA upstream 192826 21167086 ~ 21185034 (+) False LOC117599907
TU369113 lncRNA upstream 212934 21159457 ~ 21164926 (+) True G311652
TU369523 lncRNA downstream 93446 21484539 ~ 21484817 (+) True G311972
TU369528 lncRNA downstream 123378 21514471 ~ 21523897 (+) True G311977
XM_034314304.1 mRNA upstream 6190 21211252 ~ 21371670 (+) True lrp1aa
XM_034314489.1 mRNA upstream 228576 21137809 ~ 21149284 (+) True faim2b
XM_034314468.1 mRNA upstream 242726 21113434 ~ 21135134 (+) True LOC113537842
XM_034314469.1 mRNA upstream 242726 21113434 ~ 21135134 (+) False LOC113537842
XM_034314335.1 mRNA upstream 331283 21033123 ~ 21046577 (+) True calcoco1b
XM_034314441.1 mRNA downstream 19683 21410776 ~ 21435824 (+) False alas1
XM_034314442.1 mRNA downstream 19683 21410776 ~ 21430388 (+) False alas1
XM_026932745.2 mRNA downstream 19683 21410776 ~ 21425183 (+) True alas1
XM_034313987.1 mRNA downstream 52206 21443299 ~ 21483333 (+) True poc1a
XM_026932832.2 mRNA downstream 100797 21491890 ~ 21510998 (+) True dusp7
XR_004580241.1 other upstream 495495 20870652 ~ 20882365 (+) False hnrnpa1a
TU368156 other upstream 1593947 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1593947 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1860701 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 2290054 19087025 ~ 19087806 (+) True G310681

Expression Profile