RNA id: XM_026932410.2


Basic Information

Item Value
RNA id XM_026932410.2
length 2687
RNA type mRNA
GC content 0.47
exon number 12
gene id hp1bp3
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18637593 ~ 18645518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGATCTAAGCCACGCCCAGGCGTCCATTACGTCTCTACGTGGACGTAGAAAGGGGGAGGGGCGTGTAAACAGAGAGAATCCCGAACAAAGACGAAGCGAATTTACTTCAACCGATAAATCGAGTGCATTAAGATCCTTTGCAGATTATCATCATGCCGATTCGCCGTTCAGCTGCGGCTCCTCCCAAGGAGGACACGCCCCCAGCTCCAGCACCTGAGTCAGAGGCCAAAACCAACTCTGGTGAGTCCACGTCTGCAGAGGAGGAGCAGAAAGCAGCTCCGCCAGCTCCAGAGGGAGAGGAGAGCGGAGACGCAGGAGAGAAGTCCACCGAAAACGCTCCAGAGGACGGAAAAACTGGAGAGGACGGAGAAACTGCGGAGGGGGAGAAATCGGAGAAGAGCGGAGCAGAGGAGCaagggaaaaagaagaaaaagaaggatgCTGCAAAAAAAGCTGAGGAGAAGGAAGGAGGCGATGAGAAgagtaaaaaagtgaaaaggaaaatCCCTTCTTGGGCCACTATGTCCGCCAGCAAACTCGCCTGTGCCCCAAAAAGCGTTTCTGTGTCACAGCCCAAAGTGGAAGAAATCCTCCTTGATGCTATTCAGaacTGTAAGGAGCGATCCGGCGCTTCTATCTTCACCATTATGAAATACGTAACGAAGAAATATTCCTCCATGGAGATGGATAAAAGGACGAAAAGCCAGTATAAGAGGGCAATGAAGAAGCTGGTGGAAAAAGGAGCAGTGAAGCAGCTGAAAGGAAAAGGCTTCTCAGGAAGTTTCACCATCGGGAAGCTCCCTACCGAGTCCAACTCGAAGAAGAAGCCCTCAACCTCAAGCTTCTCAGGTACGAAGGGCGGGACGCTGGGTGAGGCTCTGCCGCTGATCATGACTCGCCTCTGTGAGCCCAAGGAGGCTTCGTACATCCTCATTAAGAAATACCTGGAGCAGCACTTCCCCCAGCTCAACGTAGAGAGCAGGCCTGATGTGCTTAAGAACTGCCTGCAGAGGTCTGTGGAAAAGGGATACTTGGAGCAGATCACCGGGAAAGGTGCCTCAGGGACCTTCCAGCTGAAGAAATCTGGGAATAAGGTCCTCCTGGGCGGTGGGCTCCTGGAAGATGCGATCGTCGCTGCAATCACCGCCATGAATGAGCCCAAATGCTGCAGCATAAGCGTGCTGCGCAAGTTCCTGGTAGAGAACCACCAAGACAAGACGGCTTATTTCATCGTGGCAAACCTGAAGAGAACACTGCAGAGGTGTAAGATGATGGGCTGGATGGAGCAGATCACCGGTCACGGGCTCAGCGGATCTTACCAGCTCAGCTACCCGTTCTACCCAAGCCCAGAAATGCTGTTTCCAGAAATGATGGAAAAAATCaaacagaaggagaaagagaagctCAAACAGcaaaagaggaggagagaggaggaatccgaagaggaggaggaagatgaagatgaagacgaAGAAGAGGAAGAGTCAGAGGATGAGGAGCCCGCTCCTCGTAAGAGGAGTCAGAAGAGGCCCGCGCCCAGAAAGCGTCAGCCTCCACCCAGAAAAAAACCCAAGACTACCAGCAGAAAGCCTGCGCCCGCTAAGAGACCGGCAGCTTCAGCTAAGAAAACCTCAGCCTCTGATAACAAAGCGGCATCCAAGAAGATACCTCCACCCGCTAAAGCCACGCCGGTCAAGAAAGCCGCTCCAGCCCGAAAGCCCAAAACGCCCATCGCCAAGAAGATGACAAGCCGAGTGTCCAAGCGACCGACGCCCAAGAAGACGGCAGCCAAGAAGCAGGAAACGTCATCTGCAGCGGAGTCTAAATCTGCTGCTCGAAAGTCTCTCAGGGCCAGGAAGTGATCTCCTAACGATCCCACGGTCAACTGTAGCTCCTGTCACTGCAGTGCTTTgctaattctttctttttaaaatcattttagtaGCTTCACTGTTCTCAAAGCCTCCTGTTAGaaagacgttttttttttttttgcaatccgTGTACTGTAGTGCTACATAGAAgcatttcagttttgtttctctttattttattattattttttttttaaacgagaGTTGTTGTGTTCAGAGTACGTTCACACTGCTGTGAGAACTGATGTAGGTGCTGCCGTGTTGTCTTGACTGTGCACATAAAGATGATTTTCGACTCGTTTGTCTTGGCGTAGGGAGATTAATTTCGTCTACATCGTAACCTTTTCGTTCACGATCATGTTTCAACAGTGTTTGAGAATTCTCCACTGAAGTATTCACATTTTCCGCCCTTTTTAAAGAAGGCTCTTTGTCGTTTTTGTGGATTTACAGTAAAGTAGGGAAATAGCAAACCTGGTTGGttcttttgtttaaattaaagagATAAAGTTACACATGACTGGTGCCTAGTTTTCAGTTTGACACTCAATTGGGGCcatgtgggatttttttaaactgtaatataaaggtgaatatttatataatttttttctttgtgtaataaggaaaaaaaagttgaagCTTCCATGAGTTAAAATAAGTCGAATACTATGAAATACACCCAGTAAATTAACCCAGTGGTATTCAGATTTAgaatatttgatttaaattgAGCATTAATTATGGCCTGCATGCATGTAACTGATTATGCTTTTATGTAGTCCTTAATAAAGTGACTATATTTGTACTCCAAA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367666 lncRNA upstream 5649 18631715 ~ 18631944 (+) True G310425
TU367662 lncRNA upstream 20592 18616690 ~ 18617001 (+) True G310421
TU367661 lncRNA upstream 21939 18613515 ~ 18615654 (+) True G310420
TU367657 lncRNA upstream 35013 18602378 ~ 18602580 (+) True G310416
XR_003403812.2 lncRNA upstream 35869 18596516 ~ 18601724 (+) True LOC113538055
TU367692 lncRNA downstream 93448 18738966 ~ 18809037 (+) True G310446
TU367817 lncRNA downstream 254742 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA downstream 259311 18904829 ~ 18906623 (+) False G310547
XR_004580273.1 lncRNA downstream 268776 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA downstream 268776 18914294 ~ 18959567 (+) False LOC117599928
XM_026932780.2 mRNA upstream 72782 18560022 ~ 18564811 (+) True pdrg1
XM_026932835.2 mRNA upstream 78912 18553402 ~ 18558681 (+) True si:ch211-266k22.6
XM_026932836.2 mRNA upstream 78912 18553402 ~ 18558681 (+) False si:ch211-266k22.6
XM_034314062.1 mRNA upstream 78912 18553402 ~ 18558681 (+) False si:ch211-266k22.6
XM_026932440.2 mRNA upstream 96867 18477084 ~ 18540726 (+) True phactr3b
XM_026932543.2 mRNA downstream 1193 18646711 ~ 18654039 (+) False sh2d5
XM_026932545.2 mRNA downstream 1226 18646744 ~ 18654039 (+) False sh2d5
XM_034314340.1 mRNA downstream 1260 18646778 ~ 18654039 (+) True sh2d5
XM_026932544.2 mRNA downstream 1297 18646815 ~ 18654039 (+) False sh2d5
XM_034314341.1 mRNA downstream 1639 18647157 ~ 18654039 (+) False sh2d5
TU366607 other upstream 1373930 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2135909 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 2143454 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 4116446 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 4161208 14370788 ~ 14476385 (+) False asic1b
TU367680 other downstream 41879 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 41935 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 441507 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 862737 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 1123472 19768990 ~ 19783913 (+) False vamp3

Expression Profile