RNA id: XM_026932421.2


Basic Information

Item Value
RNA id XM_026932421.2
length 1929
RNA type mRNA
GC content 0.47
exon number 8
gene id zgc:77375
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13589033 ~ 13606451 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcctcctcctctggcGTCACGTTCACTCCTCTACAAAAGCTTCATGGAGACACTGGAGCGACCGGGCACGAGCGGCGGCGGTTGTCCTGGGTGTCGGCGAAAGGGCTAAACGGAGGCGAAATGAGGGCTTTCGGTTTGGTTTTGAGGTCCGCGAGCAGCCTGGTTGCCCGGCAACAATCACGGAGGGCGATGTGCGCTTCCGCATCGCCCAGCAGAAAGTATGATCCAGGCTTCGGCTTGCTGTTCGACATCGATGGGGTTTTGGTGCGGGGAAAGACGCCCATCCCGGCGGCCAAAAAAGCTTTTCACAAGCTGGTGGACTCTAACGGCCAGTTCATGGTTCCTGTGGTTTTTGTCACAAATGCTGGGAACTGTCTGCGGCAAAAGAAAGCCGATCAGCTGTCTCACATACTGGAGGTTCCCATAACCCAAGATCAAGTCATGATGTCTCATAGTCCTCTGAGAATGTTCAGGAAATATCATGACAAGTGTGTGCTGGTATCAGGCCAAGGCCCAGTGCTGGACATTGCCAAAAACTTGGGCTTTACCAATGTGGTCAGTATCGATATGGTAAGAGAATCATTCCCCCTGCTGGACATGGTGGATCATAACCGACGACCGAAAGTGCCGtcCGCTCCTATTGTGAACCTCCCTAAAGTTGAAGCTGTGATCCTCTTTGGAGAGCCAGTTAGATGGGAGACCAACCTGCAGCTAATTATCGATGTTTTACTGACTGGTGGGAATCTGAGTAATGTGTATGAAAGTTCCCACTCCTCCCACCTGCCTCTCTTAGCATGTAACATGGACCTCATGTGGATGGCAGAAGCCCAGGCTCCAAGATTTGGTCACGGCACATTCATGGTGTGCCTGGAGAACATCTACAAGAAGATCACAGGCCAGGAGCTGAAGTACGAGGCCCTGATGGGGAAACCCAGTGAGCTGACTTATCATTACGCTGAGTATCTGATCAGAACACAGGCTGCAGAGAGAGGCTGGAGATCACCAATCACGTCACTCTACGCTGTTGGGGACAACCTCATGACGGACATCTACGGTGCCAATCTCTACAACCGCTACCTCGAGGAACGGCTGGCCAGGAAGAGTGGCAAAGCCGTGCAACAAGCTCTGACCGGCACAGGAGCGTCTGTCTCTCAGGACGAGGACACGGACAACGACTGGGAAAGCGAGTTAGCGTCTCCGTCTGCCACGTCCTGCAAGTCCATCCTGGTGTGTACAGGCGTGTATAACCCGCACATGGAGCTGCTCAAAGACACCAACCAGTGCATCAAAGAGACTGTGTTCCATGGACACCGCGACTTCCGCTTCGAGCCTGCATTGATCGAGCCGGGCAGCGTCATCCAGGATGTCCATGCTGCTGTCGAACTCATTTTCGAAATGGAAAAATTTGCAACGGAGGTTTAGTCACATGAAAACACTGAATACATGAAGATCAAACTTCTACTCTCTTGCCATTTTTAGGAactttatttcagtaaatatcTCGTAGTTATAAGGACAGATGATGAATAAGTCCATAAAGCACAATGCTTGAAGACACTGTGGTATTTTAGACATATATACCAGATAAATAGACATGATATTAGGCGTACAAGACTGTAATGTCACTTCAGGACCATCTAATTAGATGATTttcctttgtttgtgtgtttttcaacACAGTTTGCCACATGAATTggtcattttctcattttacagTATGTTACTGCAAAGTCTTTTCCCCCCAAATTTGCAGTAACTGAGAAAAAACAAGCAGAGGCCAACTTTATAATTTCTGTTATAATGCTTAAAAGAGTAAATGAGccaaaaatcaaatcaaataggTCAGGtggttgcatttattttaaaggtgttacctttattttattttattttatttttttcaaatttaccAAATATTTTAATCCtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363977 lncRNA upstream 64979 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 87202 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 238353 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 254788 13331687 ~ 13334245 (+) True G306959
TU364036 lncRNA downstream 84655 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 333975 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 397157 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 408711 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 445384 14051835 ~ 14058202 (+) True G307293
XM_026932508.2 mRNA upstream 2062 13579360 ~ 13586971 (+) True isy1
XM_026932623.2 mRNA upstream 10674 13569089 ~ 13578359 (+) True LOC113537916
XM_034314274.1 mRNA upstream 20072 13565243 ~ 13568961 (+) True cnbpb
XM_026932624.2 mRNA upstream 20080 13565069 ~ 13568953 (+) False cnbpb
XM_026932539.2 mRNA upstream 67621 13508792 ~ 13521412 (+) True mkrn2
XM_034314044.1 mRNA downstream 10558 13617009 ~ 13628791 (+) False nuf2
XM_034314045.1 mRNA downstream 10595 13617046 ~ 13628791 (+) False nuf2
XM_034314043.1 mRNA downstream 10628 13617079 ~ 13628791 (+) True nuf2
XM_026932513.2 mRNA downstream 25654 13632105 ~ 13649265 (+) True si:dkey-42i9.6
XM_026932764.2 mRNA downstream 62969 13669420 ~ 13671305 (+) True si:dkey-42i9.4
TU363207 other upstream 1126497 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2073220 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2107933 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2262673 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2273597 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 764337 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 908159 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2882910 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2882910 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3654528 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile