RNA id: XM_026932429.2


Basic Information

Item Value
RNA id XM_026932429.2
length 6649
RNA type mRNA
GC content 0.44
exon number 23
gene id atp2b2
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12789492 ~ 12959106 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTACTCCTCTGTGTGATCGATGCCTGTTTGGATTTGACATGAATGTCAAGCTGAgaGTAATGGAGAGGATCACCATGTAGACAGGAGCCGAGTGGAGACGGGCTGAAATGGGAAACGCTGTGTGGAGCGACGCCGCTCTGCAGCCGCGCTGATCCTCAGGAACTCAGCCCgcttttcctctcctctgtcACGCACACTggactggattttttttccaccttttttttaaattttattttctccatctttctcacattctcttaattttttttttggttgcattattttttttttgtccaagtGTGTTCAGATAATCTTCATCCCCAAGAGGCTCGTGCGCCACGGTGCCAGTCTCTCGGTTTCTGAAAACCGATTTAACACCACTTCAGATCAGTCTATGGAGCAATACTCCACCACCATGGGGGACATGAGGAACAGCGATTTTTACTCCAAGAACCAAAGAAATGAGGCAGGCGGCTTCAGCTGCTCGCTTATGGAGCTGCGCTCACTCATGGAGCTCCGAGGCACCGAGGCAGTCGTCAAAATTCAGGAGGATTATGGAGACATCACGGGACTGTGCCAGAGGCTGAAAACCTCACAGACAGAGGgtTTGACAGGAGATCCAGCTGACCtagaaaagaggagagaagtCTTCGGACGAAACCTTATACCTCCAAAGAAGCCAAAAACTTTCTTACAGTTAGTATGGGAAGCTCTACAAGACGTGACCCTCATCATCCTCGAAATCGCAGCCATGATCAGCTTGGGGCTCTCATTTTATCACCCGCCTGGAGGGGGCAGTGAATCATGTGGCACTGCAAATGCTGGAGCAGAAGACGAAGGAGAGGCCGAGGCTGGGTGGATTGAAGGAGCTGCCATTTTGCTCTCAGTGGTATGTGTGGTGCTCGTCACCGCCTTCAATGACTGGAGTAAAGAGAAGCAGTTTCGTGGTTTGCAGAGCCGCATCGAGCAAGAGCAGAAGTTCCAGGTGGTGCGAGGAGGTCAAGTCATCCAACTTCCTGTGGCAGACCTTGTGGTGGGAGATATCGCACAAGTCAAATATGGTGACCTACTTCCAACGGATGGAGTCTTGATACAAGGTAACGATCTGAAAATTGACGAGAGCTCTCTTACGGGAGAATCGGATCACGTGCGGAAATCTGCAGACAAAGATCCCATGCTCCTCTCTGGTACTCATGTGATGGAGGGCTCAGGCAGGATGATAGTCACGGCTGTCGGTGTGAACTCTCAGAGCGGAATCATCTTTACCCTGCTTGGAGCTGgtggagaagaggaagagaagaaagagaagaaagGTCAGGCAATGGAAGATGGCCGACAGCTAGCAGACTGCTCCCATCCCTCCTCCCACCCCATCGCAACTATAGCCACCGATGGTGCTGCAGGTGCAAATGCCCCTGGTAATGCCACCCTAGTCAATGGTAAAATGCAGGATGGAAATATGGAGAACAACCAGACCAAAGTGAAGAAGCAGGATGGAGCAGCAGCGATGGAAATGCAGCCACTGAAAAGTGCCGAGGGCGGAGAAGCCGAtgacaaggagaaaaaaaaatccaacgtGTCAAAAAAAGAGAAGTCTGTGCTACAGGGCAAGCTGACAAAGCTGGCTGTGCAGATCGGCAAAGCAGGTTTGGTGATGTCTGCCATCACGGTCATCATCCTGGTGCTCTACTTTGCCATTGACAACTTTGTGCTCCAGAAGAGGCCCTGGCTCCCCGAGTGCACTCCGATTTATATTCAGTATTTTGTGAAATTCTTCATCATTGGCGTCACAGTGCTGGTGGTGGCTGTTCCTGAAGGCCTGCCACTAGCTGTCACTATCTCTTTGGCCTACTCTGTCAAGAAAATGATGAAGGACAATAACTTGGTGCGCCATCTGGATGCTTGCGAGACCATGGGCAATGCTACTGCTATCTGCTCGGATAAAACAGGCACTTTGACCACTAACAGGATGACAGCGGTGCAGCTGTACGTTGGCGATGTTCATTATAAAACCATCCCGGACCCGAGTTCAATCCCGCCAAAAACTCTCGACGTTCTGGTCAATGCCATATCCATCAACAGTGCTTATACTACGAAAATTCTGCCCCCAGATAAGGAGGGAGGTCTGCCCAAGCAGGTGGGCAACAAAACTGAGTGTGGCCTGTTAGGACTTGTGCTGGAGCTAAAGCGAGATTACCAGACCATTCGGAACCAGATCCCTGAAGAGAAGCTGTATAAAGTCTACACCTTCAACTCAGTCAGGAAGTCCATGAGTACTGTCATTAAACTTCCAGATGGAAGCTTCAGGATGTACAGCAAAGGAGCATCTGAGATTATCCTGAAAAAGTGCAGTCGTATTCTAAACGAGGCAGGTGAGCCTCGGGTTTTCCGACCTCGAGACCGAGATGAGATGGTGAAGAAAGTGATTGAACCCATGGCTTGCGATGGCCTCAGGACCATCTGTGTGGGTTACCGAGACTTTCCTGCCGATCCTGAGCCAAGCTGGGATGACGAAAACATCATCCTAACTGACCTGACCGCAATCTGTGTGGTTGGAATTGAAGATCCTGTCAGACCAGAGGTGCCAGAAGCCATTCGTAAGTGTCAGCGTGCTGGCATCACAGTGCGAATGGTGACTGGTGACAACATCAACACTGCCAGAGCCATCGCCATCAAATGTGGCATCATCCACCCTGGAGAGGACTTCCTGTGCATCGAGGGCAAAGAATTCAACCGGAGGATTCGTAATGAAAAGGGAGAGGTCGAACAGGAGCGCATTGATAAGGTTTGGCCCAAGCTGCGAGTGTTAGCCCGGTCCTCTCCAACAGACAAACACACCCTTGTTAAAGGTATAATTGACAGCACGCTGGTGGATCAGAGGCAGGTCGTGGCTGTAACAGGCGATGGTACCAACGATGGACCTGCTCTGAAAAAAGCGGATGTCGGCTTTGCCATGGGAATTGCAGGCACAGATGTGGCTAAGGAGGCTTCAGACATCATCCTGACGGACGACAACTTCTCCAGTATTGTGAAAGCAGTGATGTGGGGACGCAACGTCTATGACAGCATCTCCAAGTTCCTGCAGTTCCAGCTTACTGTTAATGTGGTGGCCGTGATTGTGGCATTTACTGGAGCTTGTATTACACAGGATTCTCCACTGAAAGCTGTTCAGATGTTGTGGGTGAACCTCATCATGGACACTTTTGCATCCCTGGCTCTGGCCACAGAACCTCCGACTGAATCACTGCTCATGAGAAAACCATATGGCCGCAACAAGCCACTCATCTCCAGCACCATGACCAAGAACATCCTGGGCCACGGCATCTACCAGCTTGTCATCATTTTCAGTCTGCTGTTTGTTGGCGAGCAGCTCTTTGACATCGACAATGGCAGGAACGCACCTCTGCACTCGCCTCCATCTGAACATTACACCATCATCTTCAACACCTTTGTCATGATGCAGCTCTTCAACGAGATCAACGCCCGCAAGATTCACGGAGAGAGGAATGTGTTTGATGGCATTTTCAGAAACCCTATTTTCTGCTCTATTGTTCTGGGCACTTTTGCAATTCAGATTATTATCGTGCAGTTTGGAGGGAAACCCTTCAGTTGCTCTCCTCTTGATGTGGAAAAGtggatgtggtgtgtgttcttCGGGCTTGGAGAGCTGGTCTGGGGACAGGTGATATCGACCATCCCGAACAGTAAGCTGAGGTTCCTGAAAGGAGCTGGTCAGCTCACTCAGAAGGATGATGTACCAGAGGAGGAACTGAATGAGGATCAAGAGGAAATTGATCATGCTGAGAGGGAGTTACGACGAGGACAAATCCTCTGGTTCCGGGGCCTCAGCAGAATCCAGACTCAGATCCGTGTGGTGAACGCGTTCCGTAGCTCGCTCTACGAAGGCCTGGAAAAACCCGAATCTCGAACCTCCATCCACAACTTCATGACCCATCCTGAGTTTAGAATAGAGGACTCGACACCCCACATCCCACTCATAGACGACACTGACATAGACGACGAGGCGGCCAGGAAGAATTCAAGCCAGCCATCATCTCCCAACAAGAACAACAATGCCATCGACAGCGGCATAAACCTCACCACCGACACAAGTAAATCTGCTGCCTCGTCCAGTCCTGGGAGCCCCCTTCATAGTCTAGAGACTTCGCTCTAGCCCTGTTCGCCCGggaaaatctaataaaatcCTCACACAGGACGATCCACGATGTAGAGCCAACACGCACAAAAGTGCGGCTGACTGAACGTGTGGTCCGAAGcgtgttatttttttccttcttcttctccgcTGATGCTTTTAGGAGATCGAGATTTTAATTGGAACGTTTTCTGGATCGACTTGAAAAACAGAAACGGACCACTCTCTTTTCCTGAGAACGCAACGGACCACAGTGAGAATTATTTAAATCGAATTCAGCTACTCTAACTGCTTCTCCTGCATGAATGTACATTACCtgagtttttattttgaaaacgATTTGATTTAAATTCTTGGATTTGATTTGGTGGGAAGTGCCGTGGGCTGCAACTTTTAAGACTCTGATTCACTGATCTCTGAGTATCGTGTGTGGCATGTACCTAACTGTATAGATTTATTTggttaatgaataaattgtgTATCGAGGTTGCAGGGCTCGACTTGCACAAGTAGATTTTGCACCTGTTGGAAAAAGAAGAACCTATGGAAAATAGCATTTCataaaaatactatatataatatacataaatatataaatatatacagagtTTATCTTTGTTGGCATGTTGCCTTGTTTCTGCTTCAATGACTCTAACTACTTTAACTTATTTATGTCCTAAAGAGAATGtaatttgtttacaaaaaaacatagatgtgtcctttttttatttttttttttaacaataggGTTTAAACCATATGGCAGAGATAGTTGGAAAAGCTCAAGCTGTCAAATACACTCCTCTAGGTGTTTTATTACGAACCATGTGCTGGACTTGCCTGCTATTTTGTCATATAATGTAGATATTTTTAGAAGATTATAAAAGAAACCAAAATATAGTGGGATTATATAATTAATGTGGCATCTTAGTATTATACGATTGTTGGGATGAACTCTGAACAGTTCCCTCCTTCTTAAACCCGCCCCCAACTTGGACTTTAAGATGAAGGTTTAATTTCTATACACGCTTGGTTTAATGTTTTACATTCACTGCTTGGAAATGAAACCTTTTGGTCCGTCTTGAATATGAGCATCCATTTCAGGTTGGATATAAAGATATAGTTTAGAAAACCTGcttatttaacacaaaaaaagatattttctcTTCTGTGCGACCATCACAGGCTGCAGATTGTTTTGGATTTTATGTTCTAACGGATGTAAATTAAGTTATTATTTGGCTCTATGGAAATCAGAGTTGTGTTGAAAATCTTGTGATATATTGTGTTgattcttctttttcatttctagaTTTCTTTTCTTAGAAAGACAGAACCCGGCTGCAGAGCTGTTGACATTTTGAAcaactgaaaaatgaaatgaaactaaggggaacaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaaatggaaTGTGGCTTTTGACTTTTTCTAAGAAGAAAAGATAATACATATATGATGATCATTTTTCTGCACTATCCAGATATGAATGAATTTCTGTGGTGTAAATTTAGATGTGCTTCTGTGTGTTAAAAATCAAAGCTTGTCTTCCTGCAGTCAGTAAAATATACTCTAGCATCTCAACAGTATTCAGTAGTTGTTAACTATTTATTGTGCTATAGAGAGGACAACACGAAATGAAGGCACATTTACAGGGGAAACTGATATAACTGAGATCCCTAAAATTCTCCTATATTATTATCTCCTAAATTGGAACTATGGGGAAGCATGATCTTATGCTTAATATGCAAGCTAATCTCACTTTCCTCTGGTCCTAACctgattttattaatttttttttaatgttatcagTTTGTTTCCTCATCATGAGATGGTGCATAAGCTTTAATCGTTAGCTCAGGCATGCGTAACGAAATTCAATGTCAAAAATTCATATCAGGATCCTGTAACTCCCTgttattctgtaatttatttcaGAGCAACTTCTGCCAACACTGTCAGCATTTCTATGGTACAGTTTCATTTCTAATGGTGAATGTGAATGAAAATGGTAAGTACTTTGTATACAGAAAGAACTGGACTCCATTTTACAGTGACAACAATTCCATTGCCctgcaaaaaaaacaattcagttCACTAACTACACCCCGTTCCATCAACTGTTTTTAAGCATTCTAATAATTCTGAATAATATTTCTTGCAATACATCAGCTTCTATGTACTGTACTTAGCAGCATGCATTTTGTGGAACAAAGAAGATAACATGCCATTGATACTTTTGGCACTCTAGCAATTTATGGGTAAATGATAAGTGTTCATTCATcttgttttatgatttttttttaaatctatacaataattgtaaataaagaATTCAATGTCCTTGTTCATTTAATACTATGCAAAACGTCATGCTTTCTGATTGTCACCCACCTCCCCTTAGAGTGTGTTGCTGGAATGTTTgtggtctaaaaaaaaaaaaaaaagtcagtaaatGATGTGA

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363513 lncRNA upstream 50135 12797748 ~ 12797982 (+) True G306744
TU363232 lncRNA upstream 274358 12572422 ~ 12573759 (+) True G306503
TU363205 lncRNA upstream 399743 12437199 ~ 12448374 (+) True G306479
TU363193 lncRNA upstream 552388 12295369 ~ 12295729 (+) True G306470
TU363175 lncRNA upstream 558360 12284951 ~ 12289757 (+) True G306452
TU363733 lncRNA downstream 237369 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 329683 13288789 ~ 13293439 (+) True G306937
TU363757 lncRNA downstream 372581 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA downstream 373700 13332806 ~ 13333248 (+) True G306961
TU363884 lncRNA downstream 391347 13350453 ~ 13350680 (+) True G307079
XM_026932714.2 mRNA upstream 72973 12694286 ~ 12775144 (+) True iars1
XM_026932919.2 mRNA upstream 221509 12608353 ~ 12626608 (+) True sarnp
XM_026932417.2 mRNA upstream 242064 12599069 ~ 12606053 (+) True cdk2
XM_026932786.2 mRNA upstream 252320 12585125 ~ 12595797 (+) True pmela
XM_026932942.2 mRNA upstream 285888 12533239 ~ 12562229 (+) False LOC113538096
XM_026932776.2 mRNA downstream 16421 12975527 ~ 13011059 (+) True slc6a11b
XM_026932778.2 mRNA downstream 100877 13059983 ~ 13073758 (+) True slc6a1b
XM_034314478.1 mRNA downstream 100877 13059983 ~ 13071392 (+) False slc6a1b
XM_034314479.1 mRNA downstream 101086 13060192 ~ 13071392 (+) False slc6a1b
XM_026932905.2 mRNA downstream 181464 13140570 ~ 13161692 (+) False hrh1
TU363207 other upstream 385581 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1332304 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1367017 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1521757 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1532681 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1411682 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1555504 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3530255 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3530255 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 4301873 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile