RNA id: XM_026932443.2


Basic Information

Item Value
RNA id XM_026932443.2
length 2303
RNA type mRNA
GC content 0.48
exon number 4
gene id pde12
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16893231 ~ 16897114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCAAATATTAAGCGACGCGTCCGGTAGCTTGTAGCGATAGGATGAATCACAAATCGGTCCCTTTAGGATGTTTAAGGCACGGTATAGGTTGTAAAATCTGTTTCTGCTGTATCCTATTTAGTGTACTTATACAGGGATCATTGAGGCGTTTGAGATACAGCACAAATTACTCAGCCATTATTTGTGAAAAGCACACTTCCTGATGTTAATCCGCACTATCTTTTCTAGACCATATTTGCGTTATGTTTTGTTGCAGAAGAGAATATTAGTAGatgataatattttaatcaGACATTTTTGCAGCAGGATGGATCGCGCAGTTGTGCGCTGTGTGCCCTCGGAGCCCAAGCTGACCATTTCATTCAGTCTGGCCGGTAGCTCCAGACACATGCTGAGGGAGCAAACAGAGGAGCTGGGTAAGGTGCTAGCCCGGATATCTAACAGCATTATCAAGGCGCAGAGCAAAGGGAAGAAGTCGAAGAAGAGTAAAAGCGCGAGCGAAAGCGCGAGCGCGAGCAGGGATGCGGCGGACCCGGTGGTGCGGCTTTACTTTAACGGCGACGTGGTGGCTGAAGACGCGCTGAACCGCGACGCGTGGCAGGACGGCGCCGTGCTGCAGGTCGGAGACGCAAAATACAAAGTTGAACGCAATCCTCCGACTTTCACAACCGCACAGCTCCCCGCGTCAGTCCTCGCCGGATTTCCTGTCTGCCCCAAACTGGAGATGGAATTCGGGGATTTGAGATTCTGTGTGTTCAAGTGGTACAAGGAAAGCTCTCCAAACGCGCGCACACGCGGAGAAGAGGACTCCTGGGTGGAAGCAGGAAGCGACCGAGTCTTTACACCATCCAATACAGATGTGGGGTTGAGACTGAAGCTGAAATGCATGCCGGGAAGCGAGTCCAGGTTAGGCCTTCCGGTAGAGCTGGTAACCTCAAGCTCTGTGGAGGCTGGTCCAGGGGTTTGCACGTTTGACAACAGACACTTGTACACCCGCAAGGTCACGAATGAGTCCACAACCAGGGTTGTGACCTACAACATCTTAGCAGACATCTACAGTCAAACTGAGCTCTCGAAAACAGTCCTGTACCCTTACTGTGCCTATGCACTTAAACTGGACTACAGGCAAAACCTCATCAAGAAGGAGCTTTCAGGGTATAATGCTGACATCGTCTGTCTCCAGGAGGTGGATAAAGGAGTCTTCAGTGATAGCCTGGCACCTGCACTTGACGCGTTCGGCATGGACGGGGTGTTCAAAGTGAAAGAGAAGCAGCACGAAGGACTGGCCACATTTTACAGGAGATCAAAATTTAGGTTGCTCTCCAGACATGACATCATGCTGAGCGAGGCTTTAGAAATGGACGCGCTCCATAGCGTGCTCCTGGAGAAACTGTCCACCAACCCAGTGTTGAAAGAGAAGGTGGTACAGAGAAGTACGACACTGCAGGTAACTGTTTTGCAGTCCATAAGCGATCCATCAAAGATAGTGTGCGTTGGAAACACACATCTCTACTGGCACCCTAAAGGGGGAAACATTCGATTAATACAGATGGCTGTAGCCCTCAAGCACCTGAAGAAAGTCATCGCAGAAGAACATGGTGGTGCACTGATATTCTGCGGCGACTTCAACAGCACGCCATCGTCAGGACTCTTCCAGCTGCTCAGTCAGGGTTCACTAGCAGAGCAGCACAGTGACTGGGCATCTAATGGGCCTGAGGAGCTTCTTCAAATGGAGCTTCACAGCCCCTTTCAGCTGATCAGTGCGTGTGGAGTACCGGACTACACCAACTATGTAGGAGGCTTTAATGGTTGTCTAGACTACATTTTCATGGAGCCGCAGGCTTTGCAGGTAGAGCAGGTCATTCCTCTGCCCAGTCACCAGGAGCTCACCACGTACCATGCCCTTCCCAGTGTCTCTCACCCATCTGACCATATCGCTTTAGTCTGCGACCTCAAATGGAAATAAGGTTGAGACGCAGCCTCAGCTTTCCTCCTGCAAGTGAACGTCTAGATCGGGTTTTAAATCCACAGAATCACATTGCCTTCTCTAGTTGAGGGCAGAACACTTCAATTTCTGATTTACTGCGGCAACAAGATGACTCGCTGTTTATTTATCAATCTGTTTGACTCATGGATTGTGGTGgtgatattttacatttataaaaagcaTAAACAGCTTGTTGGCTATGAAATCTTTTTTGATCAGGAAAGCAGTCCATAAGATAATCCCGAGTGCAATATGAAAACAATGAATGCCGGCTTgatgtaattaaataataattaaaagtatTATTCAACTGA

Function

GO: NA

KEGG:

id description
K19612 PDE12; 2',5'-phosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU366175 lncRNA upstream 10718 16797131 ~ 16882513 (+) False G309135
TU366173 lncRNA upstream 13494 16797131 ~ 16879737 (+) False G309135
TU366176 lncRNA upstream 13494 16797131 ~ 16879737 (+) False G309135
TU366172 lncRNA upstream 13494 16877585 ~ 16879737 (+) False G309135
TU366174 lncRNA upstream 13494 16877585 ~ 16879737 (+) False G309135
TU366233 lncRNA downstream 6067 16903181 ~ 17000024 (+) True G309184
TU366237 lncRNA downstream 6743 16903857 ~ 16904257 (+) True G309187
TU366244 lncRNA downstream 20885 16917999 ~ 16919155 (+) True G309194
TU366254 lncRNA downstream 71282 16968396 ~ 16969437 (+) True G309201
TU366262 lncRNA downstream 118522 17015636 ~ 17016244 (+) True G309208
XM_026932444.2 mRNA upstream 1923 16882002 ~ 16891308 (+) True atp6ap1la
XM_026932620.2 mRNA upstream 205688 16672820 ~ 16687543 (+) True ccdc66
XM_026932622.2 mRNA upstream 205688 16672820 ~ 16687543 (+) False ccdc66
XM_026933001.2 mRNA upstream 391547 16489361 ~ 16501684 (+) False amigo3
XM_026933000.1 mRNA upstream 400583 16489361 ~ 16492648 (+) True amigo3
XM_026932739.2 mRNA downstream 13291 16910405 ~ 16912976 (+) True LOC113537970
XM_026932993.2 mRNA downstream 47350 16944464 ~ 16998819 (+) True slmapa
XM_026932992.2 mRNA downstream 47350 16944464 ~ 16998819 (+) False slmapa
XM_026932994.2 mRNA downstream 47350 16944464 ~ 16998819 (+) False slmapa
XM_026932987.2 mRNA downstream 47350 16944464 ~ 16998819 (+) False slmapa
XR_004580181.1 other upstream 391547 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 399092 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 2372084 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 2416846 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 4430695 12457601 ~ 12462536 (+) True G306480
TU366607 other downstream 363865 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 1790283 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 1790339 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 2189911 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 2611141 19508255 ~ 19517159 (+) False phf13

Expression Profile