Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026932457.2 |
| length | 834 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 5 |
| gene id | LOC113537808 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 14674490 ~ 14680861 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| K12622 | LSM3; U6 snRNA-associated Sm-like protein LSm3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU364909 | lncRNA | upstream | 75878 | 14598393 ~ 14598612 (+) | True | G307976 |
| XR_004580186.1 | lncRNA | upstream | 83669 | 14583567 ~ 14590821 (+) | True | LOC117599878 |
| TU364901 | lncRNA | upstream | 85258 | 14589025 ~ 14589232 (+) | True | G307971 |
| TU364494 | lncRNA | upstream | 526045 | 14148141 ~ 14148445 (+) | True | G307588 |
| TU364114 | lncRNA | upstream | 577704 | 14096270 ~ 14096786 (+) | True | G307281 |
| TU364930 | lncRNA | downstream | 19136 | 14699997 ~ 14780758 (+) | True | G307997 |
| XR_003403804.2 | lncRNA | downstream | 79970 | 14760831 ~ 14763174 (+) | True | LOC113537908 |
| TU364954 | lncRNA | downstream | 118112 | 14798973 ~ 14800142 (+) | True | G308018 |
| XR_003403808.2 | lncRNA | downstream | 712748 | 15393609 ~ 15407641 (+) | True | LOC113537967 |
| TU365380 | lncRNA | downstream | 731238 | 15412099 ~ 15413822 (+) | True | G308404 |
| XM_034313991.1 | mRNA | upstream | 12749 | 14630530 ~ 14661741 (+) | False | podxl2 |
| XM_034313990.1 | mRNA | upstream | 12749 | 14630594 ~ 14661741 (+) | True | podxl2 |
| XM_026932898.2 | mRNA | upstream | 45883 | 14616988 ~ 14628607 (+) | True | mcm2 |
| XM_026932763.2 | mRNA | upstream | 58596 | 14613763 ~ 14615894 (+) | True | ccdc51 |
| XM_026932966.2 | mRNA | upstream | 64326 | 14599257 ~ 14610164 (+) | True | LOC113538112 |
| XM_026932608.2 | mRNA | downstream | 84325 | 14765186 ~ 14789849 (+) | True | slc6a6b |
| XM_026932607.2 | mRNA | downstream | 88733 | 14769594 ~ 14789849 (+) | False | slc6a6b |
| XM_026932594.2 | mRNA | downstream | 332004 | 15012865 ~ 15023674 (+) | True | cand2 |
| XM_026933007.2 | mRNA | downstream | 348273 | 15029134 ~ 15040134 (+) | True | LOC113538136 |
| XM_034314013.1 | mRNA | downstream | 364683 | 15045544 ~ 15062000 (+) | False | ssuh2.1 |
| TU364869 | other | upstream | 153343 | 14514610 ~ 14521147 (+) | False | gpd1b |
| XR_004580240.1 | other | upstream | 198105 | 14370788 ~ 14476385 (+) | False | asic1b |
| TU363207 | other | upstream | 2211954 | 12457601 ~ 12462536 (+) | True | G306480 |
| TU362774 | other | upstream | 3158677 | 11515059 ~ 11515813 (+) | True | G306103 |
| TU362623 | other | upstream | 3193390 | 11480669 ~ 11481100 (+) | True | G305955 |
| XR_004580181.1 | other | downstream | 1808500 | 16489361 ~ 16501684 (+) | False | amigo3 |
| XR_004580182.1 | other | downstream | 1808500 | 16489361 ~ 16494139 (+) | False | amigo3 |
| TU366607 | other | downstream | 2580118 | 17260979 ~ 17263663 (+) | True | LOC113537865 |
| TU367680 | other | downstream | 4006536 | 18687397 ~ 18692014 (+) | True | snrpe |
| TU367679 | other | downstream | 4006592 | 18687453 ~ 18692014 (+) | False | snrpe |
