RNA id: XM_026932508.2


Basic Information

Item Value
RNA id XM_026932508.2
length 1857
RNA type mRNA
GC content 0.44
exon number 11
gene id isy1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13579360 ~ 13586971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGCGCCACGGAAGTTGTTGTTCTTGCGTCATATTTTTGCGTCGGCGCTCTCATACGTAAGGGTGTCTGCCTTGAAAAGCAGCCATGGCTCGAAACGCAGAAAAGGCCATGACGGCCTTGGCCAGGTTTCGTCAAGCCCAACTAGAAGAAGGAAAAGTGAAGGAGAGACGGCCTTATCTTGCCTCAGAATGCAACGAGTTGCCTAAAGCAGAGAAGTGGAGACGGCAGATCATCAGTGAAATTTCAAAGAAGGTGGCACAGATTCAGAACGCTGGTTTAGGGGAATTCAAGATTCGTGACTTGAATGATGAAATCAACAAGCTTCTCCGTGAGAAGGGCCACTGGGAGGTTCGAATCAAAGAACTGGGAGGCCCTGACTATGCGAGAATCGGACCAAAGATGCTGGATCATGAGGGCAAAGAAGTACCAGGAAACAGAGGTTACAAATATTTTGGAGCTGCAAAAGACCTGCCTGGAGTCAGAGAGCTCTTTGAAAAAGAACCTGTACCACCACCCAGAAAAACGAGGGGTGAGCTGATGAAGGAGATCGATGCTGAGTATTATGGCTACCGAGATGAGGACGACGGTGTGTTAGTGCCCTTGGAACAAGAATATGAAAAACAAGCAATAGCAGAAGCCATTGAGAAGTGGAAGGCAGAAAAAGAGGCTCGTTTAGCTGGGGGCGGAGGGGCAAAAGAGgtggaagaagaggaagaataCATATATGCTGTCAAAGATGATGAGtctgatgatgagatgagggaacagatggagggagaggaTGGAGCACAAACCTTTATTGCTCATGTACCTGTGCCATCACAGAAAGAGATCGAAGAAGCCTTGgtcagaagaaaaaagatggagCTGCTCCAGAAGTACGCCAGCGAGAGCTTAATGGCACAAAGTGAAGAAGCTAAAGCGCTGCTCGGCTTGTAACGATTTCCAACATCAAAGTTCATgcatttaattgtttgttttgaggGTATTCAGGTGATGCAGagtaaatgtgtataatgccaTTCAAAAATTGAAACTGGAACTCTTGAATCCATTTTGATGTGCATGTGACTGTCTAACTCCACAAAACTGGCAAAATGCATTTCAGTGGCTCATATATGCCAATATAATGACACACTGTCGTTTCTGTTTATAAGAGGAGTGTTTTATGATGTGACTATACCGTATTATTCCAGCCATTTCCGAATGTcagacactatatggccaaaagtttttggacacctgaccatcacacccatatgtgctttttgactatctcattccagatttagtccccctttgctgttataataacctccacttttctgagaaggctttccactagattttgaagcctggctctggggatttgtgttcattcagccataagagcatcagtgaggtctggcactgatgttgagtgagaaGGCCTGTCACGTAGACAACGTTCcagctcatcccaaaggtgttcagtgggattgaggtcagggctctgtgcaggacattcGAGTTCTTCTACAGCAACCTTGGCAAACAGTGTCTTATTGGAGttcgttttgtgcacaggggcattgtcatgctggaacaggtttgtgcctcttagttccattgaaaagaaattgtaatgctacagcatacaaagatatcctatacaattgtgtgcttccagttttgtggcaacactttggggaagacccacatatgggtcgTGATGtacaggtgtccacatactttggccatatagtgtgttttGGGGAAATATGTTGTTGAATATCAACACCAGCTAACAATtctttgtaaatatgttttgtaTACAGTGCTCGCATTTTTGGACCAGTAAAAATTTTCTACAAAA

Function

GO: NA

KEGG:

id description
K12870 ISY1; pre-mRNA-splicing factor ISY1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363977 lncRNA upstream 55306 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 77529 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 228680 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 245115 13331687 ~ 13334245 (+) True G306959
TU364036 lncRNA downstream 104135 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 353455 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 416637 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 428191 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 464864 14051835 ~ 14058202 (+) True G307293
XM_026932623.2 mRNA upstream 1001 13569089 ~ 13578359 (+) True LOC113537916
XM_034314274.1 mRNA upstream 10399 13565243 ~ 13568961 (+) True cnbpb
XM_026932624.2 mRNA upstream 10407 13565069 ~ 13568953 (+) False cnbpb
XM_026932541.2 mRNA upstream 57948 13508409 ~ 13521412 (+) False mkrn2
XM_026932421.2 mRNA downstream 2062 13589033 ~ 13606451 (+) True zgc:77375
XM_034314044.1 mRNA downstream 30038 13617009 ~ 13628791 (+) False nuf2
XM_034314045.1 mRNA downstream 30075 13617046 ~ 13628791 (+) False nuf2
XM_034314043.1 mRNA downstream 30108 13617079 ~ 13628791 (+) True nuf2
XM_026932513.2 mRNA downstream 45134 13632105 ~ 13649265 (+) True si:dkey-42i9.6
TU363207 other upstream 1116824 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2063547 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2098260 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2253000 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2263924 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 783817 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 927639 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2902390 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2902390 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3674008 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile