RNA id: XM_026932513.2


Basic Information

Item Value
RNA id XM_026932513.2
length 2344
RNA type mRNA
GC content 0.44
exon number 5
gene id si:dkey-42i9.6
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13632105 ~ 13649265 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTTCCAAATAAACCAGCAGGGGGAAACCTGttaatctggcaaccctggtagTGAGAGGCTCAGAGGCGTGTTGTCCAGCTCCTATATCTCACATTACAGTAGAAGACTGAAGAGCATTTGAGAGCTGAAAGGGGAGAGAGATATTCAGCATGGCCTCGTCCATCTCCGCCGTCCTGGCCTTCACTGCCACTTTGCTTTTAACCGTAGTTGCTGATGACTGTGATAGCTACTTCACTACGGCTGGTATTTACAAAAGGTCCCAGGATTGCTCGTTTATCCAGTTCTGCTGTGGAACCTGTGACAGTCGGTACTGCTGCTCAGATCCCTTTAGGAAACTCGATGAGGACTACTGCAGGCACACGGAGTACAGCACCATTCCCATTGCTGCTGGTGTAGTGTctatgatcatcatcatcatactcaTCATAGCCTGCTGCGTTTGCCCCTGCTGCTGCTTATACAAAATGTGCAGAAAACCCAGACCGGTGATGGCGACGACCACAACCACAGTAGTAACTACCCAGTATCCTCAGCAGCAGCCTCCAAACCCTTCTACTCAGTATCCAGCCTACCAGCAAGTTCCCGCACAGCCCGGCTATGGTGCCCAGCCAGGGTACGGAGGGCAGGCCATGCCCCCTGCCCCGTATCAGGGCCAGCCTTATGCACCAGGACCGCCTCCTCCATACCAGGAGAGTGGAGGATATCCTGCACCATACAGCCAGGCTGCCTATGATGGTGCTCACCCGCCGTACCCTCTCAATCCCCCTGTGCAGCCCGGCTACACTCACCCTCCTCCACAGACTGACTACAATGCAGCTCAGCCTCCATACAACCCAGCCTACATGGAGCCGCCCAAAACCGGATACTAAACCACAACTGTCTGACACCACACAGCCTCGGCTGGATTACAGACACCTACATACTTCCACTTTGGGTCACTATATGTGCTATATTTACCATGGAAAGCCTCAAGCACATGACTCGTTTTCTCATGTGATCACATCATTATTCTCGACAGATTATTATGGCGCAAAGATTCCATAACAACAATATAAACTGCAAAGATAAACAGCATATACTCCAAAGCTTTCCATGGAAAACGTAGAGCATATAGAACCTGTTATTGACTCCAAGCCATACTCTGTGCTTTTTTTGGTTGTTGGTGAGAAGAAAAGGGAATGTGGTTTGTATGAGTGTGAAAGAACCAGTGCAGAACCAAGACAGGAATCatgtatttctttcttcctttattttaaGTGTAACACTTTTACGGGGCAGGGTCCGAGCCTGATTTCCAGGTGACTGAAGGGCAGTGATGGTGTTCTCTGTGTGCAGTTTTGACCTCAGAGTTGGCGAATGTAATAAGATTGAGCTGTAGGAGGAAACTGGTGAATttagaggggggaaaaaaccttGCTCTGACTGTTCAGCTGTTACCTTTTAACACAGTATGTGGGTAGGGTGGGACAAGTGTTGCAGAAGGTGCATTCTTTTGTTcaatctgactcactgactgtaaaaagaaaaaaaaaagttggaaacGTCATTAAAAGgtaatgtagtgtagtagtgtaatgtggAAAATGATGTAAGATGTAATTACACTGATTTACAGTTTTGCATCATGACACCAAAGGTTTAAATCTCTGTTGAGCATTATATGGCACCAGGATACTTTTTGTGAACATGGTGTATAAAGAtaggtgttttattttatttcctctcaGTATTCAAGTTTGTTTAGATTCATTTGTATAACCAAGAACCCAGAATATGCCTTATTTTTCATGTTATGCAGTCAGAGGTGAGGTCAATATGTTAACCAGCAGATGTGACTTAAAGGGTCATATCCATTATCGGTTTAAAAGAGGATGTTAACTGTTTGTTCgtttactatatttttttaaaaatgtctttcatGGCATCTTTGTGACAGAAATGACGTGCAAGTTGGAAACTTGACAACAGACTTTTGTGGGTGGTGATGTGTTTTCATTTCAATCAGCCTGAATGTTTATGAAGGCAAGCAGCTCGTCACAGctcatcaggaaaaaaaaagcgtaCAGTTGCACAAAAAGCTTTAAGTTGTATAATCTTAAAAGAGATGTACAGGTTTTGGAGTTTTAATTTGCTGAAGTCGTGCTTAAGGCCTCAGACTGTAACCTTTGAATTGCCTGTTCTTGTGCCCCTTATCCTGCTCTTTCAGCTGTGTCTGATTTTCCtctccactgttttttttttctccacatgcATTATATGACTGGTTTTAGttacatgtaaaatattttcattcagaacATCTCCATATTTgcaaaagcaaattaaaaattaatgtgCTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363977 lncRNA upstream 108051 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 130274 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 281425 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 297860 13331687 ~ 13334245 (+) True G306959
TU364036 lncRNA downstream 41841 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 291161 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 354343 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 365897 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 402570 14051835 ~ 14058202 (+) True G307293
XM_034314044.1 mRNA upstream 3314 13617009 ~ 13628791 (+) False nuf2
XM_034314045.1 mRNA upstream 3314 13617046 ~ 13628791 (+) False nuf2
XM_034314043.1 mRNA upstream 3314 13617079 ~ 13628791 (+) True nuf2
XM_026932421.2 mRNA upstream 25654 13589033 ~ 13606451 (+) True zgc:77375
XM_026932508.2 mRNA upstream 45134 13579360 ~ 13586971 (+) True isy1
XM_026932764.2 mRNA downstream 20155 13669420 ~ 13671305 (+) True si:dkey-42i9.4
XM_026932899.2 mRNA downstream 25089 13674354 ~ 13691624 (+) True ippk
XM_026932582.2 mRNA downstream 56456 13705721 ~ 13721720 (+) False ecm2
XM_026932581.2 mRNA downstream 56457 13705722 ~ 13721720 (+) True ecm2
XM_026932583.2 mRNA downstream 76595 13725860 ~ 13733282 (+) True aspn
TU363207 other upstream 1169569 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2116292 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2151005 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2305745 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2316669 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 721523 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 865345 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2840096 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2840096 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3611714 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile