RNA id: TCONS_00008025


Basic Information

Item Value
RNA id TCONS_00008025
length 1669
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_004193
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29734578 ~ 29737247 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAATATTTTAGGATGGGTCTCTTGAACTCGGGGGGTTTGTTGTGTGGCCGGGCAAAAAAGAATCTGAATTATGTGGAAGTTCAGGGAAACTTTCGCGGAAACCCCTCACGCAGGTGGAAGGCTATATAAAAACCTGAAGTCGCCCTGGGTCACTTGCAAGTTTGGGCATATTCTCGAGAAAGTACCTTAGGAAGACATCTTGAGTCACTTTTAAGATTGTATAGAGGACCTTTGCACtccataatttacatttattggTTAACTGTGAAGGGAATCTACCGAGGCGTGCAATAAAATTTCGTTTAAAAGCTGACGCTGGTCGGATTGCTTTACCATTCAACACACTGACGAGCGGAGAACGAGGTGAAATCTGTCAGAAGAAATCAAGATGTTTTGTGAAAGTACTCTGTGGAGCATTGAATGCGACAAGACAAATAGGGATCCGATATGCCTGGTGGAAATTGCATCGGGCAGAACCATGTACATTGAGGGCATGAGTGGAGAAGGATGGATATCCGAACATCAGAGGCCATCCAAACAGTATCACAGGATCAGCAGTAAACCACAAACCACAGTCAAGAGCAGAATATTGCAGTTCTGGACATTCCTGCAGTTCAAGACCTCCACGCCAGCATGAAGAGACTCTTTGCTGTGTCAGAAGCACTTTTAAAATGGACTTTTAAACTGATGTGTTCGTTTGCAgttgtaaaagaaaaaacagtTGTTTGTTAAGTTATCTTATGCCAGGTGATTTCTGTTATGTACAGTTCCTTTAAATGTCCACCAGAAAGCAGCAATGAGTCGCTGGTGCTGTAAAGAAGCATGCATGAGGTGTTgacaacagtttttatttttattttttgctctgtTTGTTTAATATGCTTTTTGTAGCATATTATTGTAGCTTTAGCTGGTCAGAAGTAATTTGTTTGGGAAAATTTAAATGTCACCTTTAGGGCTTAATAATGAATGTTTAATCCAATCTTGACAGTTTCATACAGTATTGAATATGAGGTTTTCTCTATTTTTGGTCCAGCTTGTTTACAGTTCAATTTAAAATGCGCTATAAAAGTGCCTACCAATTGTGTTAGGTAGGTGtattgatataaaaaaatattcattattatggtgacacggtggctcagtagttagcactgtcgcctcattgcaagaaggtcactggctggctcagtccaaagacaaagtgaattgaataaactaaattggccatagtgtatgtgtgtgtgaatgtaagagtatatgggtgtttcacagtactggtttgcagctggaagggcatcctctgtgttaaacatatatgctaaataagttggcggttcattcccctgtgggaacccctgatgaataataataataataatactcgtTATTGTAGTTTGTTCACCATAAAATCAATCCAAATTATAGCTTTTACTCtttgtataaaaaacaaacaaggcCTTCAAATGCTTAATAATGAATGCACAATCCAGTCTTAAAATGCAACACATTTATGCAGTGATGAAATTCTgtagttttctgtatttttacttTGTCTAAATGTTTACAGCTAAATGTAAGATGCAGGATTTCATTAGTGTTTGATATGCATGTTAAATATtctgtattatattgtattgtttttaataaaatctaaacaaaaagcAG

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0034220 ion transmembrane transport biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055085 transmembrane transport biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0016020 membrane cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008023 lncRNA downstream 76708 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008811 lncRNA downstream 189589 29537982 ~ 29544989 (-) True XLOC_004190
TCONS_00008809 lncRNA downstream 414659 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008027 lncRNA upstream 22861 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008036 lncRNA upstream 181068 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008040 lncRNA upstream 223867 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008053 lncRNA upstream 624381 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008812 lncRNA upstream 1462972 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008024 mRNA downstream 48725 29682909 ~ 29685853 (-) True XLOC_004192
TCONS_00008020 mRNA downstream 76182 29650011 ~ 29658396 (-) False XLOC_004191
TCONS_00008021 mRNA downstream 76631 29652456 ~ 29657947 (-) False XLOC_004191
TCONS_00008019 mRNA downstream 83648 29574922 ~ 29650930 (-) False XLOC_004191
TCONS_00008018 mRNA downstream 111198 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008026 mRNA upstream 19613 29756860 ~ 29768054 (-) False XLOC_004194
TCONS_00008028 mRNA upstream 57908 29795155 ~ 29816429 (-) False XLOC_004195
TCONS_00008029 mRNA upstream 59623 29796870 ~ 29818866 (-) False XLOC_004195
TCONS_00008031 mRNA upstream 81142 29818389 ~ 29833698 (-) True XLOC_004195
TCONS_00008032 mRNA upstream 152581 29889828 ~ 29916607 (-) False XLOC_004196
TCONS_00008022 other downstream 76726 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008006 other downstream 1139150 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1647654 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 2015309 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 2231258 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00008030 other upstream 72450 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 159125 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 207683 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 363895 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008048 other upstream 416571 30153818 ~ 30155835 (-) True XLOC_004201

Expression Profile

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