RNA id: XM_034314341.1


Basic Information

Item Value
RNA id XM_034314341.1
length 1906
RNA type mRNA
GC content 0.47
exon number 10
gene id sh2d5
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18646711 ~ 18654039 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCTGTGGTGTTTCAGTCAGCAGGTTTGAAGTGAAAGCACAGCTAACAGCATGGGCGAGACAGTGGAGAGTGTGAACGGGACAGTGACCAGGTCTGCTGAGTACATCGGCTCATTTCCTGTTGATGACTGCAGTTTGGATGAACAAGTTCAAAAGCTGCACTTGCAGCTGAAGTCCCTCAAGcgCTACAAGCGTAGGCGCTACGTCTCCCTGAAATTCTCCATTAAAGGGGTGAAGGTTTATAACGAGGACGAGACGACTCTTCTGATGGCCCACGCCCTGCAGCGAGTCTCGCTGTCCATCGCCCGGCCCTCTGACGCTCAGTTTGCTTTCGTCGCCCACAATCCCGGCAGCCCCGACACTCAGCTCTACTGCCACCTCTTCAAGGCCAGACACGCCAGAGCTGCCCAGTTCCTGAACCTGCTGCTGTGCCGCTGCTTCCAGCTATGTTATCTGGAGAAACATCCAGAAGAGGCTGAGGACAAGTCATCTGGGAAGAAGCCCACTCGTAGCCTATCCCTGCTGAACCACGGCTTCCCGCTCAGCGTCAGCGCCCTGGTGTCCTTTCGCAGGGCGCCCAATCAGGGTCTGCTGTCAGTGACGAAGGCTGGGGTCTCCTCCAAACCCAGCACAGAGACTACTAGCAGTCCAGACGATGTCTTCCCCACGTCCCCTACGCTTGTGCGTAAGCAGGCCATGAGGGACAAAGTGCTGCGCTCGGGGGCTTACCGTTCCTTCACCTGCACTCCTGTAAAACAGCGGCACCTGCAGGAACGCCTGAACGCTCCACAAGaCAAGGGACAGGACAGTGTGCCGGAATGCAAGGTGCGCGCCCCAAGCTTGGCCGAAACCGAAGAAGCACTGGCTCATGCCGTGTGGAGCTGGGCTGGCGTCTCTAGTGACAGCAGTTCATCTCTGCTTGCTGAAGACGTCCTCGGTTCCTACTTGCTGTGTCCCCACCTCAAAGATCCCGGCGTTGAATCTCTGCTCATACGCTTCCCTTCAGGTGTGGTTAATTTGGCTATTAAGGCCTCCAGCAATGGCAGATTGTTCCTTGAGAATTGTCGTGTACAGTTTGAGAGTCTCACTGCGCTGATCGAGCACTACACTGAGACCAGAGACGAGCTGGAGGTGCCGCTGATTTGCACTCGTGTTAACCACTGTTACGAATGGGAAGAGAGCAAACTCCAGATTAAGGGCTCACTacaacagaaaaacaccaaAGATCAATCCTGGGTTTAAATCCAGTtcagtgttttatgtgtgtaaaGATCTCTGGTTTTAGACTCTTAACTCTTTAAACAGGGACCTGTTCTCCTTTTTTCATCAACTTCTAGACACTTTTAACCTTTAATGACACTTAACTTCTAACGTTCTGCACTtgatacacaaaacacaaggtGATTATGTTATGATTGTttagtttttgctttttgttctcaggaatagggtttttttttacgTTGACACCTAACaatactgacttttttttccccctctgacAGCCCTGTAATTTTTGTGTTGTATGTatatctaaatgtttttttttccaatcattttatattttaaaacatttattatgcaGTATTGTTAACTAGCCAGAGCTGTAAACTTAAATCACTCTTACGTGAGTTGGCAGGTCAGTTAAGGAGTTGAAATTTTGGCTGAATATCTCGTGAACGATGTGGAAGTCAGTGCAATCTGTTTTCTTGATAATATTTGTGGAACTGTGTTTTAATGCAATCAGCTCTAGTCAGAGTTGCAGTTTGCCTTTCTGTGGttcccttttcttttctaaCACAACCTGACCTTTTTATTAGGCTTTTTATCAGCTTTATTACTGAAGCACTTTCCTAAGAGAATCATGTATCTCTtggaattatatatataaatgttttaacagTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367666 lncRNA upstream 15213 18631715 ~ 18631944 (+) True G310425
TU367662 lncRNA upstream 30156 18616690 ~ 18617001 (+) True G310421
TU367661 lncRNA upstream 31503 18613515 ~ 18615654 (+) True G310420
TU367657 lncRNA upstream 44577 18602378 ~ 18602580 (+) True G310416
XR_003403812.2 lncRNA upstream 45433 18596516 ~ 18601724 (+) True LOC113538055
TU367692 lncRNA downstream 84927 18738966 ~ 18809037 (+) True G310446
TU367817 lncRNA downstream 246221 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA downstream 250790 18904829 ~ 18906623 (+) False G310547
XR_004580273.1 lncRNA downstream 260255 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA downstream 260255 18914294 ~ 18959567 (+) False LOC117599928
XM_026932410.2 mRNA upstream 1639 18637593 ~ 18645518 (+) True hp1bp3
XM_026932780.2 mRNA upstream 82346 18560022 ~ 18564811 (+) True pdrg1
XM_026932835.2 mRNA upstream 88476 18553402 ~ 18558681 (+) True si:ch211-266k22.6
XM_026932914.2 mRNA downstream 130 18654169 ~ 18670459 (+) True kif17
XM_026932916.2 mRNA downstream 130 18654169 ~ 18670459 (+) False kif17
XM_026932915.2 mRNA downstream 130 18654169 ~ 18670459 (+) False kif17
XM_026932794.2 mRNA downstream 33403 18687442 ~ 18692013 (+) False snrpe
XM_034314325.1 mRNA downstream 54703 18708742 ~ 18741557 (+) True LOC113537968
TU366607 other upstream 1383494 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2145473 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 2153018 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 4126010 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 4170772 14370788 ~ 14476385 (+) False asic1b
TU367680 other downstream 33358 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 33414 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 432986 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 854216 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 1114951 19768990 ~ 19783913 (+) False vamp3

Expression Profile