RNA id: XM_034314369.1


Basic Information

Item Value
RNA id XM_034314369.1
length 2891
RNA type mRNA
GC content 0.55
exon number 10
gene id slc45a1
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20041339 ~ 20053146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcagagacagaggagagagagagagagagagagagagagaggagcaatGCCTGCACCAAAGATAACACAAAGGAAAAAGACCCAGAGggaataaactgataaaaacgCGCTCAGTCCGGTTGAGGAGATGAACAGAAACCCTGACAAGTGTGTGCAGAACTCCAGAGCGTGATGTCCTCTCCCGGAATGGGCACGCCCAGCGACCCCCTCTTAGCCAGCCCAGGGCGAGAGGGCTTCGGGACGGCCCAGGGTGACACATGGAGGCCGACCCTTCCCAAAACCTGCAGCTTCCCGACGTCCACCACACGGCACCTCAGCCACCGGGCCAATAGCTTCCAGAGGCATCCAAAACGGCGAAAGCTCATCCGCCCGTCTCCGCCCCCTCCGCCCAACACGCCATGCCCGTTGGAGCAGCTGGACTTCAGTGATCTGCCTCCACGCCGCACTTTTCCTGACCTCCTCTTCAACGGCTGCATCCTGTTCGGCATCGAGTTCAGCTACGCCATGGAGACAGCCTACGTTACCCCCTTGCTTCTTCAGATGAATCTGCCTGATCAGTTCTACAGCCTCGTGTGGTTCATCAGCCCCATATTAGGGTTCCTGCTTCAGCCGATTCTTGGAGCGTGGAGTGATCGGTGCACGTCACGCTTTGGCCGCAGGAGGCCTTTTATCTTTGCCTTGGCCATCGGTGCTCTGCTTGGTCTAACGCTGGTGCTAAATGGGCGGGACATCGGATCTACGTTGGCAGACACTGCTGTTAATCACAAGTGGGGCATCGTGCTGACCGTGTGCGGAGTGGTTCTGATGGACTTCAGTGCTGACTCAGCGGATAATCCCAGCCACGCATACATGATGGATGTGTGCAGTCCAGAGGACCAGGATAGAGGCCTCAACATCCATGCCCTTCTGGCAGGTCTGGGGGGTGGATTCGGTTACATCGTGGGCGGCGTGAACTGGGACCACACCGAGTTCGGCAAGTTGATGGGAGGTCAGCTTCGAGTCATCTACCTGTTCACCAGCATAACCCTTATAATCACTACAGCTCTGACGCTTACTAGCATCCCTGAGCGTCCTCTTCTGCAGTCTCAAAAAAGGAGCTCGAAACATTTGAAGAGCCCCATCCTACCTCTGccaccttctcctcctccaACCGCTGGAGCCCTTCAGGaggtggaagaggaggaggaaggtcTTTACAGCTACCAGTTGTCTGGCCGTAGGTACCCGGATTGTTTGGGACACTCGTGTAGTGCCAATGcgaggctctgtgcaggtctcACCAGCCCCATCTCCCCTCTCAGCCCTCTGACACCCAAATATGGCAGCTTTATCAGCCGAGACAACACTCTGACAGACATTAACGAGTTTGCATCATCCTTGGGAACATCATACATAGATAGCGTGCTGATTGACTGTTACACTGGACAGCACATGCCCCAACCGTTGAAGCCGGAGACCATGACTCCATGCCTTCCTATGGGAGAAACTCCTCCTGCTCAGGTGTCACAGCTGGTCGAGGCACCGTCTCCAGCTGCCAACTCTCAGGAAAGGGAATTATCTCAACCAAACGGAGATCTGCAGGAAGCGGAAAGATTAGAGGCTATTGATGAAGTTCAAGCCAGTGAATGTTTGGAGTTGAATGAAGCATCTGAGCTCAGTGAGGCTCCGCAGGATGGTGGCAGATTAAAACGAGGAAGCATCACCTCAGGGATCCTAAAACGCCCTCAGAGTCTGGCCTTAATGGACGAGCCGCTGATTGGCCCCAGCAACGTTCTGGAGAACGGACGTAGACGCACTGTTACCTTCAGCCAGCAGGTTGCCAACATCCTCCTAAATGGGGTGCAATATGACAGTAAGCTCAGTGACAACGCAGAGGTTATAGACACTCAGATGTCTCTGAAGTTGCTCTGTATCGCCATCTACAGGATGCCCCCGTCCCTGCGCAGCCTGTGCACCAACCACTTCCTGGGCTGGTTGTCCTTCGAAGGCATGTTACTTTTCTACACGGACTTCATGGGCGAGGTGGTGTTTGGGGGCAACCCCAAGGCACCGGACAAGTCTGAGGCCTACCAGCGTTACAATGccggggtcagcatgggctgcTGGGGCATGTGCATCTACGCATTTAGTGCTGCTTTCTACTCAGCCATCCTGGAGAAGCTGGAGGAACGATTCTCTCTGCGCTCTTTGTATTTCTTCGCCTACCTGGCGTTCGGCTTGGGCACAGGTCTGGCCACGCTCTCCACCAACCTGTACGTGGTGCTGCCTCTTTGTGTCACCTATGGAGTCCTGTTCTCCTCACTCTGCACGCTGCCTTATTCGCTGCTCTGTGAATATTACCAGAGCCCACAGTTCTGCGGCTCCACAGAGGACGGCACCAGGAGGGGCATGGGGGTGGACATCTCTCTTCTCAGCTGCCAGTACTTCCTGGCCCAGATCCTGGTCTCCGTGGCGATGGGACCTCTGACTTCACTGGTGGGCGGGGCTCAGGGCGCGATGTACTTTGCGAGCCTCATGTCATTTGTGGGCTGCCTGTACTCCTCGCTGTGTGTGGTGTACCAGCTGCCACCTCCGGAGGGCAGAGCGGATGTTGAGACTGGAGTGTGAGCGACTACAGCTCAGCTGTAACGGAGAAGTGCCCACTACAGAAGAGACGAGCGAGCCaaatccactttttttttttggccagcaGGCAACAGATCAGGAAGACACATTAGGAACTAAAGTGGACTCAACATGAGACTCAAAAAGTACAATGCCTTcatattccactagggggcagacTTACTGCTTTTTCAGTGCAAGTAACACAAAATGTCGAACTGTTCTGCGATTTTTGgatttccagaattcagcagctttgGGCAGTCAGGggggagggaggaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368581 lncRNA upstream 13027 20027896 ~ 20028312 (+) True G311220
TU368586 lncRNA upstream 45069 19996064 ~ 19996270 (+) True G311225
TU368568 lncRNA upstream 77671 19962514 ~ 19963668 (+) True G311207
TU368565 lncRNA upstream 80024 19961101 ~ 19961315 (+) True G311204
TU368245 lncRNA upstream 135573 19899878 ~ 19905766 (+) True G310905
TU368604 lncRNA downstream 17827 20070973 ~ 20071359 (+) True G311232
TU368619 lncRNA downstream 56815 20109961 ~ 20110224 (+) True G311246
TU368607 lncRNA downstream 66237 20119383 ~ 20177272 (+) False errfi1a
TU368791 lncRNA downstream 322867 20376013 ~ 20376698 (+) True G311395
TU368803 lncRNA downstream 342608 20395754 ~ 20396286 (+) True G311407
XM_026932696.2 mRNA upstream 18350 20004405 ~ 20022989 (+) True mmel1
XM_034313999.1 mRNA upstream 146919 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932462.2 mRNA upstream 172858 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA upstream 172858 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA upstream 172858 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932955.2 mRNA downstream 82521 20135667 ~ 20145354 (+) True errfi1a
XM_026932768.2 mRNA downstream 126762 20179908 ~ 20237403 (+) True pax7a
XM_026932769.2 mRNA downstream 126762 20179908 ~ 20237403 (+) False pax7a
XM_034314208.1 mRNA downstream 127669 20180815 ~ 20237403 (+) False pax7a
XM_026932422.2 mRNA downstream 225426 20278572 ~ 20288754 (+) True park7
TU368156 other upstream 257426 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 257426 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 524180 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 953533 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1349325 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 817506 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile