RNA id: XM_026932559.2


Basic Information

Item Value
RNA id XM_026932559.2
length 2178
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC113537879
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17111543 ~ 17115161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTGAGatgcatttccacacacacactttctaagAAAGTGTGAGGCAAGAACCAGCACCACCTTCAATAACTAGTATAAATTTGAGGTGGCAGCTTCCGCTTATCCATTAAAAATTTGATCCTTCACAAAACATCTTGTAAGGAAGGGATTTCTTGCTCCCTGCTTCCAACAACTTTCTTGTACATATTAAGAGCAAGATCATGTCATACTTGGCAGCCATCCTTGTAATTGGTGGGAGAGGAGGAAAGGCCTTTGATTTTAATAGTACTGGAAATGGAGCCACATTGAGAAAGATCTGGGTGTGGGCTGGTGGCTGGCAGATAAAAGCCATCAAGGTTTGGCTTACTGATGGCCAGTCCCAGGAGTTTGGAGAACCTGCTGGGAGCTTTTCAGAATTTATATTTGAAGATGGAGAGCATTTCACCTCCCTTTCACTTTGGGGAAATGGAGCTGGAACACGTCTGGGTGCCATCAAATTCAAGACAAATCGCTCCCGAGAGTTCTTTGCACACATGACAAGCTGGGGGCTGAAAACAGAATATCCAGTTGATGTGGGTTCTGGGATCTGCATGGGAATCACAGGACATGCTGGTGCAGATATTGATTGCTTAGgcttcattttcattaacaCCATCAGGTCTACTCAGCTAACAGATGTTCAATATCCCACACTTCATGATGTGATACCCAATGTGGCTGTTGAAGAAATGAAATCTATGTCCTACCAAAATAATACTACTGAAACTTTAAATTATACATTAGAAACCtccaaaaaaatcatcaaaagaTCCTCCTGGTCTGTAACCAACAAGCTCGAATTCACATTTAGCATGGAAGTGAAGGCAGGAATTCCTGAGGTTGCTGAAATATCAACTGGTTTTGGCTTCAAAGTGGGAAGTGAGGACACCTTTACTTTAGACTTCACTGAGGAGAAAACTGAGAAGTTCTCGTTTCCTATCAAAGTCCCTCCAGGGAAAACCGTGGATGCGGACATTACAATTGGCCGGGCTATAGTTGATCTCCCCTACACTGGCACAGTCCAGATTACCTGCTATAATAACAGTGTGCTGGAGTTTAAAACCAGTGGAACCTACAAAGGGGTCACTTACACCAAAGCAAAAATAGTTGTGAATGACTCAGCAAAAAGCCTGTAAATTCTACATCTACAGAAAGAGCTTGTTGCAGACGCACATGTTtatttggtaaaatattttttaagaaacattCTGAGAAATGAATACAACAAATCTCAGTTATTGTAGATTTAGTATAATTGTAGCTTGctttaaacaaattttattttttattattactgtttaaattGTTAATTTACTGCTATGGAGATGAttcttttgcttctttttaatCTTAAAATCTCTAATGATTTCAATTAATTAAactgttctctctgtctgattttgaataaaaacatcCTATCACTAATGTGTGAGACCTCATTAGTTTTCATTACCAGTTTCCACCCTTAGAACAAATACTGCAGCAGACACTCCCCCACTCACATAGGTTTTTACATCCCTAAAGGTTCATCTAGTGTTCTTTATAGTACACTGAGCTGTATACTGAATTAAATTCTCATTccactggaaaataaaatagatgAATGTCTGTCATATTTTAGACAGTGAATCCATTCAACTGTGTAAATCTCTAGAACCTCCAGTTATAGATAAGAcagtataattacatttaacatcGGTACCCTCTTTTTTCCAAAATTCCAGAGCCAATCATTGAAGATCTGCTCACTCCCCATTCATAAAAAGCTTGCTGAGAGTGAAGtcaattaaaaattcatttatgttttaaaggtaaaatataataaatctaattaatTCACCTTCTTCAGGTTTTTTCTTTTCGTCTGTGATGACTATGTTTGATTTTATCTTGGTGTAAATAATTAGATTTGATTACTGGCTTTTCATAATGTTGATCATAATgattctttgttattttttcctACTATTGTACAAGTGATGAAGAATCACATTTTTTGATTGGcaaaatattctgaaaaatgTAAGATGAACAAAtctcatttgattttttttatttagtttgctTTTAGCTTTTTACCTTTGCACATGTTAATTTACTGTTATGGGGACAATTCTTGTGCTTCTTTTCAAAATTGAAATCAATAAAATTTAGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU366262 lncRNA upstream 95299 17015636 ~ 17016244 (+) True G309208
TU366233 lncRNA upstream 111519 16903181 ~ 17000024 (+) True G309184
TU366466 lncRNA downstream 57101 17172262 ~ 17184538 (+) True G309389
TU366592 lncRNA downstream 129539 17244700 ~ 17248075 (+) True G309461
TU366593 lncRNA downstream 129539 17244700 ~ 17248075 (+) False G309461
XR_004580174.1 lncRNA downstream 161279 17276440 ~ 17277568 (+) False LOC117599872
TU366620 lncRNA downstream 161295 17276456 ~ 17277832 (+) True LOC117599872
XM_026932873.2 mRNA upstream 3627 17105866 ~ 17107916 (+) True LOC113538050
XM_034314379.1 mRNA upstream 3627 17105907 ~ 17107916 (+) False LOC113538050
XM_026932590.2 mRNA upstream 11113 17086777 ~ 17100430 (+) True abhd6a
XM_026932592.2 mRNA upstream 33494 17076546 ~ 17078049 (+) True LOC113537900
XM_026932589.2 mRNA upstream 35899 17006607 ~ 17075644 (+) False LOC113537897
XM_026932849.2 mRNA downstream 18726 17133887 ~ 17135114 (+) True LOC113538038
XM_034314375.1 mRNA downstream 48611 17163772 ~ 17164608 (+) True LOC113537832
XM_026932887.2 mRNA downstream 53849 17169010 ~ 17170004 (+) True her15.2
XM_026932910.2 mRNA downstream 64461 17179622 ~ 17180679 (+) True LOC113538082
XM_026932533.1 mRNA downstream 145818 17260979 ~ 17263459 (+) False LOC113537865
XR_004580181.1 other upstream 609859 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 617404 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 2590396 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 2635158 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 4649007 12457601 ~ 12462536 (+) True G306480
TU366607 other downstream 145818 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 1572236 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 1572292 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 1971864 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 2393094 19508255 ~ 19517159 (+) False phf13

Expression Profile