RNA id: XM_026932561.2


Basic Information

Item Value
RNA id XM_026932561.2
length 2441
RNA type mRNA
GC content 0.51
exon number 10
gene id mfsd4aa
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19042582 ~ 19059543 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttggaGACGGTGCTGGAGCTAAATAAAGtcggtgtggtgtggtgtgggaGGATGTGGTGGGAGGATCATGTTGATGCTTGAACACTTTCCAAACTCCAGCACTTTCACTCCGTCATGCGCGTGTCTGTGAGCGGCTGCGGCAGGTTCACGCACTGATGTAGGAGAGCGCGCGCACACGCCACGCCACGCCACGCCGCGCCGCGCGCGCAGAGCGATGAACCTGGACCGGAACTGTAACGTGGTGCAGAGTGTGGTGGGATCCCGCAGCTGCGCGCTGTTCCGCGGCCACTGGCAGCCCACGCTCACCTACTGGAGCGCCTTCTTCAGCTTCGGCCTGTGCCTGGCCCTGCTCGGCCCCACCGTGCTCGACCTGCGCTGCCAGACGCGCTCCAGCCTGCAGCAGGTCACTCTCGCCTTCTTCGCGCAGCAGCTCTGCCTGTTCGTGGGAAGCTTCGTGGGCGGTTTCTTCAGCAAGTCACTTTGCTCCTCTTTGTCATCCCTCGCTTCATCCACATTCATCATCTCACTGGTGTTCGCCTTCATTCCGCTATGCAGCAATTTGCTGATGCTGGTAGCTGCAATGGCTATTACAGGCCTGGCCATGGGCATCATCGATACCATCTCCAACCTGCAGCTGGTGAAGCTCTACCAGAAAGACTCCACTGTCTTCCTCCAGGTGCTCCACTTCTTCATTGGACTCGGGGCATTGCTGAGCCCCCTCATCGCTGACCCGTTTCTGTCTGAAACTGACTGCATCTTAGGAAACACCACCATCAATTCATCATCAACCATGAAACACTTGAGGAACACGCTATCTGGCAGACACCTACATAACGTGTCCCACATTCCTCTCCATACTGAAGGAGAAGTGGTGACCAAAGTGTCCTACGCCTTCTGGATCATGGCGTTCGTCAATCTTCCTGTGCCTATCGCCGTTCTGGTTCTAATGTATCGGGAGCGGCTGCTCCCATGTTGCCCTGAGCCCAGTCCTCGTCTCTTGGGTGGGGAGTCGCACTCGGATACAGTAAAGATGCAGAGAATCTCGGAGCAGGCTGACCTGAGCACGACCGAGCTGCACGAGCCTACAGGCCACATGGACATGCTAAACTGCTATCACCTCAGCAAGCTGAAAGGACTTCCGCCATCTTTCTTTGGGCTCCATGTCTTCGGAGGGATGGTGCTTTTCTTCTCCGATGGCATAGTGGGGTCATACACGGGTTTCATTTACACCTACGCAGTGGCTCCTCCCATGAGTCTATCGCACAAGATGGCGGGCTACCTGACCAGCGTGTTCTGGGCAGCCATCACAGTGGGGCGTCTGGCCTCCATACCGCTGTCTTACCGGGTCAAACCCGTTCGCCTGCTCATATTTAACCAGGTTGGAGTGATAGTGACTCAGTTGCTTCTGCTCATCCTCTACACGAACAGTGCCTTCCTCTTCATCGGTACCTGCTTTCTGGGTCTGTTTATCAGCAGTGTCTACCCGTGCATGCTGGCTTTCACGGAAGACCTCCTTGACTACAAAGGTTGTGCCACTACAGTCCTTGTGACCTCTGCTGGAATGGGAGAGATGCTTCTGCAGTTACTGGTGGGATCGatgatCAACACACACGGCAGTTACAGCTTCATGTTGTGTGGCATGATCTTTGGCTGCATGGGCTTCACACTCTTCCTGGCACTGCTTTTAGttcaacacagacacaaaaagtACTTAGCAGCTGCTTCCAATGCCATCCCTGTAGCAGAAAGGTCTGGGACTAACGAAGCTGAACACTGACTGACGACTGGCGCTACAGAGCCGGAGTCGGACCAAACGGACCAAGATGCTCGCAGTCTGAGACTGTGGCGTAGGAGGGAAGGGGACGAGACTGGATCATAGTCACTGGTTTGAGACAATCCTCAAAGCCTGAGAAGTGTCGGACCTTTCATAGAACTGTAGACCAAAGATGATTTGTCGTTGATTTGTGTGCATAAAGCAGGTAGATGTGTTGTAAGCCTGGGGAAATTGGGACCTTCACTTCTAGATTCTGCTGTCATTGCGAAAAGCAGAGAAAACCTTCCACTTTCCTCCTGTCTCGACATGCTTGGTATGCGAGTCGCGCTAAGACTTGTTTAAAGCTTATTTTCAATCTTCTGGAAAGCTAAATTTATACCATCACAGATTGCTTGTGATGTTTGCAACTGATTTCCTGAGCTGTAAATAATGAAACGGTGTAAATGAACAAATACAGCACTTTCAGTCCAGTTTAGTTGTAAATCTCACATTAGGAAataatgcactttttaaaaaagaataatcattatttttgtgGTTTAAGTTTCGAACAAGATGGCATTCATAATTtctgcttggaaaaaaaaaaaaggttaaaggGATTATAATGTCCAACCAGATGTAGGACAATCCAGCAATGCAGTGATTAAACTCGGATCAAACGTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580273.1 lncRNA upstream 78095 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA upstream 83018 18914294 ~ 18959567 (+) False LOC117599928
TU367817 lncRNA upstream 135962 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA upstream 135962 18904829 ~ 18906623 (+) False G310547
TU367692 lncRNA upstream 233548 18738966 ~ 18809037 (+) True G310446
TU367933 lncRNA downstream 792 19060335 ~ 19066486 (+) True G310649
TU367966 lncRNA downstream 21991 19081534 ~ 19082121 (+) True G310679
TU367970 lncRNA downstream 22826 19082369 ~ 19085507 (+) True G310680
TU367980 lncRNA downstream 30839 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA downstream 50586 19110129 ~ 19113027 (+) False G310703
XM_034314408.1 mRNA upstream 4917 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA upstream 4917 18979997 ~ 19037668 (+) False cdk18
XM_026932834.2 mRNA upstream 238683 18790926 ~ 18803902 (+) True si:ch211-112f3.4
XM_026932733.2 mRNA upstream 301028 18722845 ~ 18741557 (+) False LOC113537968
XM_026932959.2 mRNA downstream 278389 19337932 ~ 19343063 (+) True c20h1orf50
XM_026932957.2 mRNA downstream 290205 19349748 ~ 19363983 (+) True cdc42
XM_026932958.2 mRNA downstream 290205 19349748 ~ 19361222 (+) False cdc42
XM_034313986.1 mRNA downstream 290422 19349965 ~ 19363983 (+) False cdc42
XM_026932871.2 mRNA downstream 435215 19494758 ~ 19498061 (+) False svbp
TU367680 other upstream 350571 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 350571 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1778922 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2540901 16489361 ~ 16501684 (+) False amigo3
TU367971 other downstream 27482 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 448712 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 709447 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 709447 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1811109 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile