RNA id: XM_026932582.2


Basic Information

Item Value
RNA id XM_026932582.2
length 2884
RNA type mRNA
GC content 0.44
exon number 9
gene id ecm2
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13705721 ~ 13721720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACTGTACTGAAGAAGCCTCTTAGGCAAGTCCTGGCTTCGCTCAGAGTGCAGCCTTGTCTGTTTTAGACATTTATCAGCTCGGCAGCCGAGCAGACGCACACTGTCCTAGCGCTGCTGGCTAAGCCCACACAGCCTGGGAAAGGCGGAAATATTTGGCCTCGCAAAACTGcctgcaaaccactgACTTCCGTCATGAGACTATGGCTTTTACTTGCCGTGTCATTTTTCTGCTGGCTAAGCTACAGTGTTGCCAaagatcagaatcagaatcgtCCTGTGGCTCAAGGAAAACGAAGGAGGGGGAAGAAAATGGCCCATCAAGGCAGGGTGCCAGTAAATGGTGGATATAACGGAGCATCAGTTTTCATCGAGTCTTACAAAGGAGTAGAGGAACCAAAGCCGAACTACAATGTTATTCCAGCTCATGATGTCTCTGAAAACTCTGGCGATTCCCCTGTTCCTAATGATCCAAGCTTCCCTAATGCTGCGTTTCTGCCTGATAAGAgccagagaaaagagaaatacaaagaggaagaggagaggcaCTTGAGGAAAGATGCTGAGCGTAAGAGGAGAAAGAAGCAAAAGAAGGAGACAGAAAAACTGAGGAAACAAATGGAAGAGCAAGAGCGGGAGGAGGAAATGAGGAAGTTGAGAGAGGAAGCAGTGAAGAgagcagcagaagaagaagagaagaggaagaggatggaGGAACAACAGCGCGTGGAGGAAgataggaggaggaggagggagaaggAACAGAGGGAGATGCTGAGGGCTCTTGAGGAGGCAGCAGAGCAAGCACAGGCTGAACTGAgggcagaggaagaggaagatgaagaggaggaggaagaggagactGTGTTGTTAAGAGGGGACGTGTTCCAAATGCCACCACAGTTGCCTACCCCTCCAGACTTTCCCCCACCGACAGCACCAGCCGAGCCCAGTCACGCTGGAGAGGGAGATGATGCAGACGAGGAATCTGCACGGATTAGCTACGCACTCCCTCAGGGATGCACAATCTCTGATGTCATTGTCTCCTGTGAAAATGCCAAACTCACCAGTATTCCTCCTCTTTCCATCCCTGAGCTCAAGTCTCTCAATCTACAGGGAAACGCAATCACTACCATTCCAGCGGAAGCATTTAACGGTGTACTGAATTTGGAGTGGATagattttggaaaaaataaGATCTCATCATCTGGAATTGATCCACAAGCATTTACCAAGCTTAAATTTTTAACCCGGTTATATATGGATGGAAATTTGCTTGAACACATTCCCCCAAGGCTTCCACATACGCTTCAAGAATTAAAGCTCAAtgagaacaacctccaagagaTGGATGAGGACAGCTTTGAAGGTCTGAGCAGTCTGGTTACTTTGGAAATGGAAGGGAACTTACTGAGTGAAGCAAATGTAAATCCCAAATTCTTCGCACCACTGAAACAGCTCACCTACCTACGGATGGGCAGGAACCACTTCCGCACCATCCCGCAAGGCCTGCCAGCGTCTCTGCAGgagttgCATCTTGAAAACAATTTAATTGAGGAATTACCTGAGGGAGCTTTTAATCAAAGCAAAAGCCTCAACGTCATTGTGTTAAGACACAATAAAATAGATGAGACAAGGATTGCACCCTTTGCCTGGATCAATCACAGGAATCTGGAATCAATAGATCTCTCGCACAACAACCTCCATTTGGTCCCTTCATTCCTGCCAAAGTCCTTGGTTCACCTGGTGCTGGTCGGCAATCAGATCGAACGCATTCCAGGATATGTGTTTGCACACATGGAACCTGGCCTTGAGTATCTATATCTCTCCTACAACAAGCTGGATGGAGAAGGGGTGGAACCAGAGTCTTTCTTTGGTACATTTAACACAATGACTGAGCTATGTCTAGACCACAACCAACTGACCAGCATTCCCATTGGTGTCAACGAGATGACGTCATTACATTTCCTCAGgcttaacaacaacaacataagGCACATTGGAGAGGACAGTATCTGCGACCCCTTGAATGATGAGGATTCACACATAGTAGCCTTGCGCCTTGAGAATAATCTGCTTGATCCCCGGAAAATTCCTCCAACTGCCTTCTCATGTGTTAGGTCTTATTCTAGTGTTGTTTTGAGGCCTCAAAGAATTAAATAATCTGATAACGAAATCTTAAGCATGTTAATCTTTCTTAACACAATTGGCCTTGCGCCCAAACAAAGCTGAGAGAGgcaatgtaatgtaaatttCTCCAAACTCTCCATCCTGTTCCAAGTGTTTTGCATGAAGGTCACTGTTCAATATGTTGACTGTTTTATAAGACAAGGGCCTTTATTCATTAGCTATGCGAAATAAGGCATGGTTACTTGCTGGTATGTAGAGCATGTCAGCAGATGTCTGTGGTTATGGGGACCTATTTAGACTTTTAGTCTTTCTATGAATGCTAAATGGAAACATTTTACTTTCCAATTATTCAGTCAGGGAAAACGGCAGATCTGAAGATCCAAAACTATGTAAGGATATGATTCTGTTCACACcagtatttcattatttcagcatttctCATACATTTCCAGAGatcataaagaaaaatgtatagtttTACAATCAACCTACCAAGAATGTGTTTTACAATAAGTTTATTTGTACAGCTGCACATTACCATGAAGAACAAACCAAAAGATGATTACtactgaattaaaaagatgtaCTAGTGTCCTAATATTTTCACAGTATTCATAAGAGCTCTGGGGCATGAGTACATTTTCAGTTTCTGTGCATATAAACCACTCTCTACCATTCAAGGTTACATTTACCCCTTTGTCTGgatatgtatttaataatgtatttaataaagtaaAGCCTGATTTTACCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364036 lncRNA upstream 12809 13691106 ~ 13692912 (+) False ippk
TU363977 lncRNA upstream 181667 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 203890 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 355041 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 371476 13331687 ~ 13334245 (+) True G306959
XR_004580226.1 lncRNA downstream 218706 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 281888 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 293442 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 330115 14051835 ~ 14058202 (+) True G307293
TU364114 lncRNA downstream 374550 14096270 ~ 14096786 (+) True G307281
XM_026932899.2 mRNA upstream 14097 13674354 ~ 13691624 (+) True ippk
XM_026932764.2 mRNA upstream 34416 13669420 ~ 13671305 (+) True si:dkey-42i9.4
XM_026932513.2 mRNA upstream 56456 13632105 ~ 13649265 (+) True si:dkey-42i9.6
XM_034314044.1 mRNA upstream 76930 13617009 ~ 13628791 (+) False nuf2
XM_026932583.2 mRNA downstream 4140 13725860 ~ 13733282 (+) True aspn
XM_026932584.2 mRNA downstream 23284 13745004 ~ 13748733 (+) True omd
XM_034314437.1 mRNA downstream 32248 13753968 ~ 13757523 (+) True ogna
XM_034314436.1 mRNA downstream 54776 13776496 ~ 13792919 (+) True nol8
XM_026932944.2 mRNA downstream 54908 13776628 ~ 13792919 (+) False nol8
TU363207 other upstream 1243185 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2189908 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2224621 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2379361 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2390285 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 649068 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 792890 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2767641 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2767641 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3539259 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile