RNA id: XM_026932589.2


Basic Information

Item Value
RNA id XM_026932589.2
length 8732
RNA type mRNA
GC content 0.53
exon number 44
gene id LOC113537897
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17006607 ~ 17075644 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTGGACGGAGTTTCAGCGACAGTCAGACAGCATGCCGGCGACGGAGAAAGACCTGGCCGAGGACGCGCCGTGGAAGAAGATCCAGCAGAACACGTTCACGCGCTGGTGCAACGAGCACCTGAAGTGCGTGAACAAGCGGATAGCCGACCTGCAGATGGACCTGAACGACGGGCTGCGGCTCATCGCCCTGCTCGAGGTGCTCAGCCAGAAGAAAATGTACCGGAAGTACCACGCCAGGCCCACCTTTCGCCAGATGAAGCTCGAGAACGTCTCCGTGGCGCTCGAGTTTCTGGACCGCGAGAACATTCGCCTCGTCTCCATAGacaGTAAAGCGATTGTGGACGGGAACCTGAAGCTGATCCTGGGGCTGGTATGGACCCTCATCCTGCACTACTCCATCTCCATGCCCGTGTGGGAAGAGGACGAGGACGAGGACGCCAAGAAGGCGACGCCCAAACAGAGGCTTCTGACCTGGGTCCAGAACAAAGTACCCGACCTGCCCATCAGTAACTTCAGTGAGGACTGGAGGGACGGCAGGGCTCTGGGGGCTTTAGTGGACAGCTGCGCAccgggtttgTGTCCTGACTGGGAGACGTGGGACCCTGTGAAGCCAGTTGAAAATGCTACAGAAGCCATGCAGCTGGCTGATGACTGGTTGGGAATCCCTCAGgtgATCGCTCCTGAAGAGATCATCGACCCGGGCGTGGACGAGCAGTCTGTCATGACTTACCTGTCGCAGTTCCCCAAGGCCAAACTCAAACCCGGAGCGCCTCTCAAACCCAAACTCAATCCCAAAAAGGCCCGTGCTTATGGCCCAGGTATTGAGCCGGTGGGCAACAGAGTGATGCAGCCGGCTGTGTTCACTGTGGACACGTTCAGCGCGGGACAGGGGCAGGTCACGGTCTACATCGAGGACCCCGAGGGCAGGAGGGAAGAGGTCAAGGCCGTACTCAATGAAGGCAAAAAGACCTACAATGTAACATACATTCCTCAAGTGATGGGGCCTCACAAGGTGACTGTGCTGTTTGCTGGCCAGGAAATTCCCAAGAGCCCATTCGAAGTCAACGTGGACAAGGCTCAGGGCGACCCCACCAAGGTCACAGCCAAAGGTCCAGGGCTCGAGCCAGTGGGCAACATCGCCAACAAACCCACTTACTTTGACATCTACACAGCAGGCGCTGGTGTGGGTGATGTGACGGCGGTGATTAAGGACCCCCAAGGCAATAAGAACACCGTGGAGGTCATGATGGAGGACAAGGGCGACAGCGTGTTCCGCTGCACATACAGACCAGTTCAGGCTGGTCCTCACACAGTCAGTGTCATGTTTGGAGGCATCGCCATTCCCAAGAGCCCTTACAGTGTCAGCGTTGGTCCAGCGTCCACCCCCAGCGCTTGCCGAGCAACGGGCAGAGGCCTGCAGCCCCGAGGAGTGCGTGTACGCCAAGTGGCCGACTTCAAGGTGGACACAAGAAACGCAGGAAGTGGCGACCTAAAGGTCACAGTAAAGGGTCCTAAAGGCCTAGATGAGCAGGTGAAACTGAAGGAAGCCATGGACGGCGTCTATGCCTACGAGTACTATCCAAATGAACAGGGCAAGTACACAGTGAGCATCACATGGGGTGGCCAGCACATTCCCAAGAGTCCTTTTGAGGTTCTGGTCGGCCCTGAAGCTGGACCGCAGAAGATCCGAGCTTGGGGCCCGGGTCTGGAGGGAGGCGTTGTGGGAAAGTCTGCTGACTTTGTGGTCGAGTCTGTTGGCACAGATGTGGGAGTGCTGGGCTTTGCCATCGAAGGCCCATCTCAGGCCCGGATCGAGTGTGAGGATCAGAATGACGGATCCTGTGACGTCAGGTATTGGCCCACGGAGCCTGGGGAGTATGCTGTCCATATTATGTGTGATGATGAGGACATCGAAGAGAGTCCGTTCATGGCTTACATCGTTCCTGACAACAAAGCAAGCAGTCCTGACCAGGTTAAAGCCTATGGTCCAGGCCTGGAGAAGACTGGTTGTATCATCAACAAGCCTGCAGAGTTCACAGTCGAGGCCAAAGATGCTGGAAAGGGTCCTCTGAAAATCCTTGCCCAGAATGCTGACGGCGAGCCCATCGACGTGAAGGTGAAAAGTAAAGGAGACGGGGTGTACTCCTGCTCCTACACCCCCACCTCCCCCGTCAAACATACGGTGGCGGTCACCTGGGGAGGGATGAACGTTCCCAGCAGCCCTTTCAGGGTTCAGGTTGGAAAGGGCAGTCACCCTCACAAGGTGAAAGTGTTTGGTCCAGGAGTGGAGAGGACTGGCCTAAAAGCTCACGAGCCCACACACTTCACTGTGGATTGCACAGAAGCTGGggaagGTGATGTCAGTGTGGGTATCAAGTGTGATGCCAACATCATCAGTGATAAAGAAGAAGACGTTGACTTTGATATCATTCCCAATGCCAATGACACCATTACAGTGAAGTACATCCCACCAGGAGCTGGACGCCTCACCATCAAAGTCCTTTTCACAGATCAAGAAATTCCTACGAGTCCGTTCCGTGTCAAAGTGGATCCTTCACATGATGCATCCAAAGTTAAGGCAGAGGGTCCTGGGCTCGCTCGAGCAGGCGTGGAGAGTGGAAGGCCCACTCATTTCACTGTTTACACCAAAGGAGCAGGCAAAGCACCACTGGACGTGCAGTTCTCTGGTCCAAACAGGGGCCAGCCTGTCCAAAACTTTGAGATCATCGACAACTATGATTATTCCTACACTGTTAAATACTTGCCGGTCCAACAGGGTGAAATGGTGATAATTGTGACTTTTGGAGGTGACCCCATCTCTAAAAGCCCCTTTGCAGTGGGAGTGGCAGCACCGCTCGACCTCAACAAGATTGAAGTCGATGGCCTGGAAAGCAGAGTGGAGGTCGGCCAGGATCAGGAATTTGCAGTGTGCACTAAGGAAGCAGGTGGTCAGGGCAAACTGGAAGCTCGGATTACCAGCCCAACAGGCAAGTCTGTGCCGTGTGTAGTGGAGCCGCAGCTCGGTAAAGAAGCCAGCCTCGTAAAATACATCCCAAAAGAGGAAGGTGCCCACGCTGTCGAGGTCCTCTATGATAGCAACCCAGTGCCAGGGAGCCCCTTCGCTGTGGACGCCATGTTGCCTCCTGATCCCAGCAagGTCAAAGCTTACGGGCCAGGGCTGAAAGGAGGTTTGGTCGGGAATCCTGCGGAATTTATAATCGACACCAATGGAGCTGGAACAGGTGGGCTTGGCCTGACTGTAGAGGGTCCAACCGAAGCCAAAATCGAGTGTTCGGACAACGGTGACTGCACATGCTCCGTGTCCTACCTTCCTACCGAGCCTGGCGAATACCTTGTTAACATCCTCTTTGAAAACGTCCACATACCTGGATCTCCTTTCCACGCTGACATCGAGTACCCCTTCGACCCCACAAAGGTCGTGGCATCAGGTTCAGGCCTGAAGCGTGGTAAAGTGGGCGAGACCAGCGTGCTCAACGTGGACTGCGCCAAAGCTGGGCCTGGACAGTTGACACTGGAGGCTGTGTCTGATGCAGGCTCCAAGGCTAAGACTGAAGTGCTGGACAACAAGGATGGCACTTACACAGTGACCTACGTGCCACTGACAGCAGGCATGTACACTCTGCTGCTGAAGTATGGAGGGACGACCGTCCCAAACTTCCCTGCCAAAGTGGTGGTGGATCCAGCCGTCGACACCAGCAAGGTGAAGGTGTTTGGACCAGGAGTGGCTGGAGAAGGCGTCTTCAGGGAGGCTACCACTGACTTCACCGTCGATGCTCGGGCTTTGACGAAAGTGGGAGGGCAGCACATTAAAGCTCAGATTAAGAACCCATCCGGTGCTGCCACAGACTGCACCATTGCCGACCAGGGCGATGGCACTTACAAAGTGGAGTATACTCCGTTTGAGAATGGTGTTCATGCTGTGGAGGTGCTCTATGATGAGACTCCTCTGCTTAAGAGCCCCTTCCAGGTAGCAGTGAGTGAGGGTTGTGATCCCACTCGAGTTCTAGCTGAAGGCCCTGGATTGGAGGAAGCGCTAACTGACAAACCTAACAAGTTCTCAATAATCACAAGAGGAGCTGGTATCGGTGGCCTGGGCATCACGGTCGAGGGCCCGTCCGAGTCCAAGATGTCCTGCAAAGACAACAAGGACGGTAGCTGCGATGTGGAGTACACTCCTTATGCTCCTGGACTttatgatgtgaacattacatATGGAGGACAGCACATTCCAGGAAGTCCATTTAGAGTGCCAGTAAAGGATGTGGTGGACTCCAGTAAAGTGAAGCTCTCGGGGCCTGGAGTGGGTTCAGGCGTTCGTGCCAAGATCCCTCAGACCTTCACTGTGGACTGCAGCAAGGCTGGAACAGCACCACTCTCTGTAGCTGTAACTGGCCCTAAAGGCGTGGCTGAGCCGGTTCACGTAAAGGATAACGGAGACGGAACACACACCGTAGCCTACACACCCTCTGTGGAAGGACCTTACTCTGTAGCAGTCAAATACGCTGAGGAAGAGATTCCACGCAGCCCATTTAAACTGCGTGTCCTGCCCACACACGATGCCAGTAAGGTTCGTGCCAGCGGGCCAGGACTGACTACAAGCCTGCCTGCCAGCCTGCCTGTGGAGTTCACCATCGATGCCAAGGATGCAGGAGAGGGCCAGCTATCAGTCGAGATAACGGACAAAGATGGAAAACTGAAGAAGATCAGCGTTCAGGATAACCAGGACGGGACGTACACGGTGTCCTACGTGCCGGATAAAGTGGGCCGGTACACCATCGTCATCAAATATGGAGGCGACGAGATTCCGACTTCACCGTATAGAGTGCGGGCGACTGCTACAGGCGATGCTAGCAAGTGCACAGTCACTGGCCCTGGCATCGGGCCTACCATCGGCATCGGAGAAGAGGTGGGCTTTGTGGTGAACACAAAAGGCGCAGGGAAAGGGAAGGTCTCGTGCATCGTTGTCACACCTGATGGGACCGAGGTGGAGGCAGAGGTCATCGAGAACGAGGACGGTACCTTCGACATCTTCTACACCGCGCCAAAGCCGGGAACCTACGTCATCTACGTGCGATTCGGTGGAGAAAATATCCCTCACAGCCCTTTCAAAGTCATGGTCACGGATGGCACCTACATTCCGGTGAGCAGTATGAACGGCGCTGGCTTCCGGCCTTTCGACATGGTGATTCCCTTCACCTTAAGCAAGGGTGAAATCACAGGCGAAGTTCACATGCCATCGGGCAAAACAGCTCAGCCTGAGATTATCGACAACAAGGACGGGACAGTCACTGTGAAATACGCTCCTACAGAGGCAGGACTGCACGAGATGCACATCAAATACAATGGCACCCACATACCAGAGTCTCCTCTACAGTTCTACGTCAACAATGCTAATAGTCCCAATGTGACAGCGTACGGACCAGGCCTTGTTTATGGCATCGCTAACAAACCAGCTACTTTTACCATCTACACTGAGGATGCTGCAGAAGGTGGCCTTGATTTGGCTGTTGAAGGTCCGTCAAAAGCAGAGATCAGCTGCACTGACAACAAGGATGGCACTTGTACGGTCACGTATCTTCCTACACTACCTGGAGATTACAACATTCTGGTGCGTTATAACGACAAGCACATAGCCGGCAGCCCCTTTACTGCCAGGATCACAGAGGACAACAAGAGGAGGTCTCAGGTGAAGCTGGGTTCGGCTGCTGACTTCGCACTGGACATCACAGAAACGGACCTCAGTCAGCTCACAGCCAGCATCAAAGCTCCCTCGGGACGTGACGAGCCCTGTCTCCTCAAGAGGCAGCCTAACAACCGCATCGGTATTTCTTTCATTCCCAGAGAGGTCGGGGAGCACTTGGTCAGCATTAAGAAGAACGGACGCCATGTTCCCAGCAGCCCTATCTCCATCATGGTGGTGCAGTCTGAGATCGGAGACGCCAGCAGGGTGAAAGTGTTCGGACCGGGCCTGGTAGAAGGACGCACGTTCCAGATGGCTGACTTTATAGTGGACAcgagagatgctgGTTATGGAGGACTGGCTCTGTCCATTGAAGGCCCAAGTAAGGTGGACATTCAGACAGAGGACATGGACGATGGGACCTGTGGCGTTGCCTACTGTCCTACAGAGCCTGGTACCTATGTGGTGTCCATTAGGTTTGCTGAAGAGCATGTTCCTGGGAGTCCGTTCAGTGTGAAAGTAACAGGAGAAGGACGAATCCGTGAGAGTATCAGCCGTCGCCAAAGAGCCGCTTCTGTCGCCACAGTTGGAAGCGTTTGTGATCTTAACCTGAGGATTCCAGAGATCGACGCCCATGACCTCTCCGCTCAGGTCACCAGCCCATCGGGCACAACCGAACCTGCTGAGATTGTGGCGGTTGGCAACCACACCTACTGCGTGCGCTTCGTTCCACATGAGATGGGCGTGCACACGGTGAGCGTGAAGTACCGCGGGCAGCATGTGCCAGGCAGCCCCTTCCAGTTCACCGTGGGGCCTCTGGGAGAAGGAGGGGCCCAGAAAGTGCAGGCAGGTGGCCCTGGGCTGGAGAGGGCAGAGATCGGTGTGCCAGCTGAGTTCAATATCTGGACACGTGAGGCGGGTGCTGGAGGCCTGTCCATCGCTGTGGAAGGCCCCAGTCGTGCAGAAATCTCCTTCGAGGACAGGAAGGACGGATCGTGCGGCGTCTCTTATGTGGCTCAGGAACCTGGTGACTACGAGGTGTCCGTGAAGTTCAACGACCAGCACATCCCCGACAGCCCCTACCTGGTGCCCGTGTGTGCTCCCCCACACGATGCCCGGCGCCTCACTGTTACCAGTCTTCAGGAGTCAGGCCTCAAGGTAAACCAGCCAGCTTCATTCGCTGTGCGTCTGAACGGTGCTCAGGGCGCCATCGACGCCAAAGTGCACAGTCCCTCCGGAGCTCTCGAGGACTGTGTGGTTTCCGAACTGGAACAAGACAAGTACGCCATTCGGTTTATCCCACGGGAGAACGGCGTGCACACTATCGACGTGAAGTTTAACGGCACACACATCCCGGGCAGCCCGTTCCAGGTGAGAGTTGGGGAGCCAGGACAGGGCGGAGACGCCGGACTTGTCACTGCTTACGGCGCTGGACTAGAGAAAGGAACTACAGGCAACCAATCCGAGTTCACCATCAACACCAGCAAAGCAGGACCAGGCTCCCTGGCAGTGACAGTTGAAGGGCCTTCAAAAGTGAAGCTCGAGTGCCAGGAGTGTCCCGAGGGCTTCAGAGTGCACTACACACCACTGGCTCCTGGAAATTACCTGATCAGCATCAAATACGGTGGCCCTAATCACATCACAGGCAGTCCTTTCAAGGCCAAAGTCACCGGTCCCCGGCTTGTGAACGTGACCAACGCCAGTGAGACCTCCACACTGATGGTGGATCCTGCTGTCAGGGCGATCAGTGCCAACTCCTCCAACGCCATGCCCAGGGCTGCCTCTGATGCCAGCAAAGTGACCAGTCGAGGCCCAGGTCTCAGCAAGGCCTACGTGGGCCAGAAAGCCAGCTTCTCTGTGGACTGCAGCAAAGCGGgtaAAAACATGCTTCTGGTAGGAGTTCTCGGACCTCAGACCCCATGCGAGGAGATCATGGTGAAGCACATGGGCAGCATGCAGTACAATGTCAGCTACGTCCTGAAGGAGCGTGGAAACTATGTTCTGGCGGTGAAATGGGGCGAGGAACACATCCCGGGCTCACCATTCCATATCACTGTGCCTTAAATCTGACGCAAATAAACCATCGTGGGAGCAATAGAAAACGGCCAAACCATAACACTTAAATTACGCCCCATATCGATGACAAACTTGCActtgattttgtattttgtacatgtGATGTGTGGACTGTTGTGCTTAAGTTGCAAATcttttgtgattgttttttttttaaaccactgaCGAGTTTTTCAACAACTTCCAGGGGTACAAAACCAGATTTGCAAACATAGATGTTGGATTCAGGTGTCAGTTTGAAGAGTCTCAATTCCTTTGAAATCTTATTTACTACTGATGCTATTTTGTCTGTCTGACTCGCATTGTATTTCCATTACTGTCATTTTTGATTCTCGTACCTGCTGCATAACCTGGACTACTGCGATTGTTTACATGTTCACGAATCAAACGAGGCTCCATAGTTGCTCAAGTTATCAACTTGAACCACTTCAACAGgctttccatttttctttcatctgtAATTCACTCCATTAGAGAATAGATGCATCGTAATCATATCCAAACTGTATTCAATTTATAATAGCTGGGTAATATGTGAATAGCGAAGTGATTGGAAAGCGCATGAAAAATGCATGTAGtccatcttttttctttgttttggaaTTGCAGCATTTGTACAATGTTCTTTTAGCACACATTTTTACAAAGCATTTAAATTGAAATGTACACTCCCCAAAACACGCAGTATTCTTTCTGACTTTCATGGAGGATATTGGAGATAATTCACCTCCTAGCAGTTACAGTGACAGATTTACAAGGGTCTTTTCATGTATACTGGTATTTGTCTTATCTAACTAGTTTTGATAAGGTAATAAAGTATTtttcttaatgttttaaaagcagaaaGGGCTATGCTATTATAGTACTCCATTGTATAGTCCAGGGTGCCTTAATGTGAAATGATGTACATTTGgaaatttaaaacaaactggAATAAAGATTGAAAAAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU366233 lncRNA upstream 6583 16903181 ~ 17000024 (+) True G309184
TU366254 lncRNA upstream 37170 16968396 ~ 16969437 (+) True G309201
TU366244 lncRNA upstream 87452 16917999 ~ 16919155 (+) True G309194
TU366237 lncRNA upstream 102350 16903857 ~ 16904257 (+) True G309187
TU366172 lncRNA upstream 126870 16877585 ~ 16879737 (+) False G309135
TU366466 lncRNA downstream 96618 17172262 ~ 17184538 (+) True G309389
TU366592 lncRNA downstream 169056 17244700 ~ 17248075 (+) True G309461
TU366593 lncRNA downstream 169056 17244700 ~ 17248075 (+) False G309461
XR_004580174.1 lncRNA downstream 200796 17276440 ~ 17277568 (+) False LOC117599872
TU366620 lncRNA downstream 200812 17276456 ~ 17277832 (+) True LOC117599872
XM_026932993.2 mRNA upstream 7788 16944464 ~ 16998819 (+) True slmapa
XM_026932992.2 mRNA upstream 7788 16944464 ~ 16998819 (+) False slmapa
XM_026932994.2 mRNA upstream 7788 16944464 ~ 16998819 (+) False slmapa
XM_026932987.2 mRNA upstream 7788 16944464 ~ 16998819 (+) False slmapa
XM_026932989.2 mRNA upstream 7788 16944464 ~ 16998819 (+) False slmapa
XM_026932592.2 mRNA downstream 902 17076546 ~ 17078049 (+) True LOC113537900
XM_026932590.2 mRNA downstream 11133 17086777 ~ 17100430 (+) True abhd6a
XM_026932873.2 mRNA downstream 30222 17105866 ~ 17107916 (+) True LOC113538050
XM_034314379.1 mRNA downstream 30263 17105907 ~ 17107916 (+) False LOC113538050
XM_026932559.2 mRNA downstream 35899 17111543 ~ 17115161 (+) True LOC113537879
XR_004580181.1 other upstream 504923 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 512468 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 2485460 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 2530222 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 4544071 12457601 ~ 12462536 (+) True G306480
TU366607 other downstream 185335 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 1611753 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 1611809 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 2011381 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 2432611 19508255 ~ 19517159 (+) False phf13

Expression Profile