RNA id: XM_026932624.2


Basic Information

Item Value
RNA id XM_026932624.2
length 1587
RNA type mRNA
GC content 0.46
exon number 5
gene id cnbpb
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13565069 ~ 13568961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCCAGTTacaccaatctggcaaccccgaGGTTCTTGCGTGCCGTGCGCAAACGGCGCGTGGCGCAGCAGCGCAGAGAGGGAGGCGACCCGAAAACTAGAAACCAAGCAACGAAGCGCCTAGCCGAGCTTTATTTGAAGACTAAGATGAGCAGCAACGAGTGCTTTGGCTGCGGCCGTACCGGCCACTGGATCAAGAACTGCCCGAATGCTGGCCGCGGCCGTGGTAAAGGTCGTGGAAGGGGAAAAGATCTGTTCTGCTATCGCTGTGGTGAACCAGGCCATGTTGCAAGAGACTGTGAAAGAACTGAAGATGCCTGCTACAACTGTGGAAGGAGTGGCCACATCTCCAGGGACTGCAAGGAGCCCAAGAAGGAGAGGGAGCAGGTCTGCTACAACTGTGGCAAAGCCGGCCACGTGGCCCGAGACTGCGACCACGCCAACGAGCAGAAGTGCTACTCCTGTGGCGGGTTCGGGCACATACAGAAAGGCTGCGAGAAGGTCAAGTGCTACAGgtgtggtgAAATTGGCCACGTTGCTGTCCAGTGCAGCAAGGCGAGTGAAGTCAACTGCTACAACTGTGGCAAATCTGGGCATCTGGCAAAGGAATGCACCATCGAGGCCACCGCTTAGTCCTGGTTTCCTGGTCGCCCCTTCTTTTTCTGATTGATGGTTGTATTATTTTCTCTGAATCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTAGTCCCAGGCCAGTGAGCTCTTGACGCGTTAAAAGAAGGAAAGGGGTGGAAAAAATTTCCACTTTctgcatttaatacaaaaaaagttTATGTTTAGTTTGGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCATGCCACTGGTGAACAGGGATGAGTGAGTTGAGTGGGAGTACGCAGCTAAGAAATGTCGAGTCGGCCTCTCCGGGCCTCATCGAACAGGGCCTCGGCGAGAGAACagtaggggaaaaaatcaagGAAATATGAACTTCCGGGtatgatttgcttttttttttttttttttttttttttttttttttaaatcaatggtAGTGAGTTGTGCTAAGAGTGATTAACCTGGAAAAGCAGTACAGGACTCATGCAGTCAGATCTGCCCAGGAACAACCAGCAGCACGCAGCTAAGTGGAGAAAACAGTTATTAAATGCATCATTGATAAGCAAGTTTACAGCACATTCAAAACATGAAAGAACATGAAATAATTTAGGAGAACAATATCTTTGTAAGGTGCAAGTTTGCTTAAGTGGAGCAGCTAAGAAATCAAAAAGTCAAGTGTGGAATCCCACGATTGCAGGTCATTTTACCCAAGGAGGAAAAAACTTCAGTGGAATAGTAGTGggtgggaaaaaatatgatttggaGTTAGGAGAAAGGTGAATGTTTTCACAGAaatcaaatgttatttttgtacaATATCACTTAGACtactgtaaaagtaaaaactaTCATTCGCTTGTACTCAGTTTTTAAGTCGGAAGGTAAAAGCAACTGAAGTCCTAGAaaatagaaatgtaattttaacTATCAATAAAGCTGGAGGAGGAAGGGGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363977 lncRNA upstream 41015 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 63238 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 214389 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 230824 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA upstream 231821 13332806 ~ 13333248 (+) True G306961
TU364036 lncRNA downstream 122153 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 371473 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 434655 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 446209 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 482882 14051835 ~ 14058202 (+) True G307293
XM_026932541.2 mRNA upstream 43657 13508409 ~ 13521412 (+) False mkrn2
XM_026932539.2 mRNA upstream 43657 13508792 ~ 13521412 (+) True mkrn2
XM_026932540.2 mRNA upstream 43657 13508794 ~ 13521412 (+) False mkrn2
XM_026932920.2 mRNA upstream 69084 13481411 ~ 13495985 (+) True tsen2
XM_026932921.2 mRNA upstream 69084 13481617 ~ 13495985 (+) False tsen2
XM_026932623.2 mRNA downstream 136 13569089 ~ 13578359 (+) True LOC113537916
XM_026932508.2 mRNA downstream 10407 13579360 ~ 13586971 (+) True isy1
XM_026932421.2 mRNA downstream 20080 13589033 ~ 13606451 (+) True zgc:77375
XM_034314044.1 mRNA downstream 48056 13617009 ~ 13628791 (+) False nuf2
XM_034314045.1 mRNA downstream 48093 13617046 ~ 13628791 (+) False nuf2
TU363207 other upstream 1102533 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2049256 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2083969 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2238709 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2249633 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 801835 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 945657 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2920408 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2920408 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3692026 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile