RNA id: XM_026932633.2


Basic Information

Item Value
RNA id XM_026932633.2
length 1786
RNA type mRNA
GC content 0.48
exon number 13
gene id rbck1
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14065621 ~ 14080135 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

accctgtgtaggataagtgATTAAAGCATGGCTGGGCCCTACACCACCAGCAACTTGAGGAAAGCGGAGGAAACAGCACAGTCGCTCAGTGAGGCCATCAATACAGGGGACAAAGCCGAGGCCATCCGATGTGTAGAGCAGCTCCTTACGCTGAACGTGCCTGTGTGTATGCGACTTACTCCAGAGGTCTATTCCAAAGAGTGCATCAGGTTGAGAGTTGGCGTTGAGGATGCGCTGTCTGATGCCTACATCACAATGCTGGTAACTCCTGGCATGACGATCTCAGAACTGAAACAGAAGATTAACCGAGACTATGGCTTCCACCCGTCACTACAGTGCTGGATCATAGGGAAGCGTTTTGCTAAGGATGGAGACACTCTCTTCAGCCACAACGTGACCAGTGATGATGATCAGGCATTTCTCTTCCTCAAATCTGCCCATTCTGCCAATCTCAGCCGTGAACAGCAGAAACAAGAGGAGCAGGACAGGAAGATAGGCGGTATAATTGAGAACATTGAGGTGCTCAGTAGAGGTCCGGGAGAGTTGGGAGCACGCCACAAACAACCTGAAGTGTCTCCTGTGCGAAAACCTTGTCCAAAGCCTCCTTCCAAACCAGTGATAGGATGGTGTTGTTTGCAGTGCACATATGTAAACAAACCCACACGGCCAGGGTGTGCAATGTGCAGTGCTGCGAGACCAGAAAACTATAAAATACCAGATATATACCAACCAGATGAAGAGGAAGCACGCAGAATTCAGCAAGAAGAGCTGGCCAGTCTACAGTACCAACAGTCTATTATAGAGGAACGAGAGAAGAATTTCCTCAGTCTGCTGGAGACAGACAATCTCGACCTGGTTAGTAACACAGAGGAGATTTGCTGCCCCATCTGCTGCGAGCAGGTCCAGGCAGGAGAGGGGGCCACTCTCCGAGAGTGCCTTCACAGCTTCTGCAGAGAATGTGTGAAGATGACCATTCTGAACTGTGTGGATGCAGAAGTGGCGTGTCCTTATGCAGATGGGGAGTACGCCTGTGACTGTGTCCTTCAGGACCGAGAGATTAAAACACTCCTGTCACCCGAGGAGTACCAGAAGTTTTTGGAGTTGAGGCTGAAAATTGCTGAGTCACGCAGTGAGAACAGTTACCACTGTAAAACACTGGACTGCCCTGGCTGGTGCATATTTGAAGACGATGTCAACGAGTTTGCCTGTGACATCTGCAATGAGACCAATTGTCTCCTCTGCAAGGCTATTCACAAAGGCATGAACTGTAAAGAGTACCAAGATGACCTTCGCCTCAGAGCAGAGAACGATGCAGCAGCCAAACGAACCACAGAGACACTAGAGATGATGTTGCAGAATGGTGAAGCCATGTACTGTCCTAAATGCAAAGTGATCATCCAGAAGAAAGATGGCTGTGACTGGATCTGTTGCCTCATGTGTAAGACGGAAATCTGTTGGGTGACCAAACAGGCCAGATGGGGTCCTCAGGGTCATGGAGATGTCTCAGGTGGATGTAAATGTCACCTCAACGGCGCCCCTTGTCACCCAAATTGTCAAAACTGTCACTGATCCCTAATCCGCCCTGTGAGGACACATCATATTTCCACTAACACTGTGGAGTAAGGAAGTAACCTCTTCTGTAACTTAGCAGACTGAAGCTGTTGATCCATAAGCATCTATCCATAATACAATCAGTTTATTCGATGGTATTATGAATCATCAGTTGGGTATGTGATCACAATCTTCATAACCTTTACATGAActgtttaccaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364127 lncRNA upstream 9163 14051835 ~ 14058202 (+) True G307293
TU364094 lncRNA upstream 50971 14015162 ~ 14016394 (+) True G307262
TU364104 lncRNA upstream 63534 14003608 ~ 14003831 (+) True G307272
XR_004580226.1 lncRNA upstream 107175 13940426 ~ 13960190 (+) True LOC117599900
TU364036 lncRNA upstream 374453 13691106 ~ 13692912 (+) False ippk
TU364114 lncRNA downstream 16135 14096270 ~ 14096786 (+) True G307281
TU364494 lncRNA downstream 68006 14148141 ~ 14148445 (+) True G307588
XR_004580186.1 lncRNA downstream 503432 14583567 ~ 14590821 (+) True LOC117599878
TU364901 lncRNA downstream 508890 14589025 ~ 14589232 (+) True G307971
TU364909 lncRNA downstream 518258 14598393 ~ 14598612 (+) True G307976
XM_026932816.2 mRNA upstream 127543 13852220 ~ 13939822 (+) True stab1
XM_026932641.2 mRNA upstream 220733 13816856 ~ 13846632 (+) True nisch
XM_026932644.2 mRNA upstream 233880 13816855 ~ 13833485 (+) False nisch
XM_034314000.1 mRNA downstream 11800 14091935 ~ 14096019 (+) True bloc1s1
XM_026932805.2 mRNA downstream 21920 14102055 ~ 14112510 (+) False rdh5
XM_026932804.2 mRNA downstream 21920 14102055 ~ 14112510 (+) False rdh5
XM_034314418.1 mRNA downstream 21941 14102076 ~ 14112510 (+) False rdh5
XM_034314419.1 mRNA downstream 25044 14105179 ~ 14112510 (+) False rdh5
TU363207 other upstream 1604829 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2551552 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2586265 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2741005 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2751929 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 290653 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 434475 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2409226 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2409226 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3180844 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile