RNA id: XM_034314296.1


Basic Information

Item Value
RNA id XM_034314296.1
length 9862
RNA type mRNA
GC content 0.44
exon number 16
gene id ephb2b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12265705 ~ 12413095 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCACCGGGTCCGCGCCGTCGTCTGCTGTCAATGGCTTTCGGggcttattttatttgaatgtctggacttttttctttacagtttcGCCCTGAAAACCAATAATGGATATCCTATGGATTTTATGGATACTACCCACAGCAGTGGCTCTTGAAGAAACTTTAATGGATTCCACTACAGCAACAGCTGAGCTGGGATGGACGGTATTTCCTGTATCGGGCACCAGTGAGAACAGTTGGGAAGAGGTGAGCGGGTATGACGAGAACATGAACACTATTCGCACATACCAAGTGTGCAATGTCTTTGACGCCAACCAGAACAACTGGGTCCGCACCAAGTACATCCACCGGCGAGGAGCTCAGCGCATCCACGTGGAGATGAAGTTCTCAGTGCGGGACTGCAGCAGCATCCCCCGGGTACCAGGCTCCTGCAAAGAGACCTTCAACCTGTACTACTACGAATCGGATGGCGACACGGCCACTAAAGTGCACCCTCCGTGGATGGAGAACCCATGGATCAAGGTGGACACCATCGCTGCTGACGAAAGTTTCTCGCAGGTGGATTTGGGTGGACGTGTGATGAAGATCAACACAGAGGTGCGCAGCTTCGGGCCTGTATCACGTAACGGTTTCTACCTGGCCTTCCAGGATTATGGTGGCTGCATGTCACTCATTGCCGTCCGCGTTTTCTACCGTAAATGCCCACGGGTCATCAGGAATGGCGCCATTTTTCAAGAGACTCTTTCAGGGGCTGAAAGTACTTCCTTGGTAGCAGCAAGGGGAGTGTGCATCCCAAATGCAGAAGAAGTTGATGTACCCATCAAACTCTACTGTAATGGAGATGGCGAGTGGATGGTGCCCATCGGACGGTGCATGTGTAAGGCTGGCCATGAACCTGTGGACAATGGCACTGTATGTCGAGCATGCCAGTCGGGTTTCTTCAAGCCAGCGCAGGGCGATGAGCCGTGTCTGCCATGTCCCATCAACAGCCGCACCACCAACGATGGAGCCACCAACTGCGTGTGCCGCAACAACTACTACCGCACCGATTCGGATCCTATCCAGATGCCCTGCACAAccGTACCATCTGCTCCACTGAACGTGATTTCCAATGTGAACGAGACGTCACTGAGGCTGGAATGGAGTCCTCCACGTGAGAGCGGTGGGCGCGGTGATGTCGTTTACAATGTGATCTGTAAGAGCTGCGGTGGCAGAGGCTGTACACGATGCGGGGACAATGTTCAGTTCACTCCACGCCAGCTGGGCCTCACCGACACATGGGTCTACATCAGTGACCtgctagcacacacacagtacacctTTGAGGTGCAGGCTGTCAATGGAGTTTCAGACCAGAGCCCACATTCACCACAATATGTGTCTGTCAACATAACAACCAACCAGGCCGctcccTCCACAGTTTCTATAATGCACCAGGTTAGCCGTACCGTGGACAGCATTACTCTGTCCTGGTCGCAACCGGATCAACCCAACGGAGTCATTCTGGACTACGAGCTGCAGTACTATGAGAAGGATCAGACTGAGCATAACTCATCCATTGTGAGGAGTCAGACCAACACGGCCATCATCCGTGGCCTCAAGCCTGGGGGAATTTACGTGTTCCAAGTGCGAGCGCGTACCGTGGCCGGATTCGGACGCTACAGTGGCAAGATGTACTTCCAGACCATGACAGAGGagGAATACAACACCAGCATACAGGAGAAACTGCCTCTCATCATTGGTTCAGCAGCTGCCGGGCTAGTCTTCCTCATCGCTCTGGTGGTCATCATCATTGTGTGTAACCGACGTGGCTTCGAGAGAGCAGACTCAGAATACACAGACAAGCTGCAGCACTACACCAGCGGCCACAGAATGAAGATCTACATTGACCCATTTACCTATGAAGATCCCAACGAAGCAGTAAGAGAGTTTGCCAAAGAGATCGACATCTCATGTGTGAAGATCGAGCAGGTCATCGGAGCAGGTGAGTTTGGGGAGGTGTGCAGTGGCAACCTGAAGCTcccaggaaagagagagatgtttgTCGCCATTAAGACACTGAAGTCGGGATACACCGAGAAACAGAGGCGGGACTTTCTGAGTGAGGCCAGCATCATGGGACAATTTGACCACCCTAATGTCATACATCTGGAAGGTGTGGTGACCAAAAGCAGCCCTGTGATGATCATCACGGAGTTTATGGAGAACGGCTCACTGGACTCTTTCCTTAGGCAAAACGATGGGCAGTTCACTGTGATCCAGCTAGTAGGCATGTTGCGTGGTATTGCCTCGGGAATGAAGTACCTCGCTGATATGAATTACGTGCACCGCGACCTGGCAGCCCGGAACATCCTGGTTAACAGCAACCTGGTGTGTAAGGTGTCAGACTTCGGGCTCTCACGCTTCCTGGAGGATGACACATCTGACCCCACCTACACAAGTGCTCTGGGTGGGAAAATCCCCATCCGCTGGACTGCACCAGAAGCCATCCAGTACAGGAAATTCACCTCAGCCAGTGACGTATGGAGTTATGGCATCGTCATGTGGGAGGTGATGTCCTACGGAGAGAGGCCATACTGGGACATGACCAATCAGGATGTGATCAATGCTATTGAGCAAGACTACAGGCTGCCTCCACCTATGGACTGCCCCAGTGCTCTGCACCAGCTCATGCTCGATTGCTGGCAGAAGGACCGCAATAATCGTCCCAAATTCAGCCAGATTGTTAACAACCTGGACAAGATGATCCGTAACCCCAACATGCTGAAGGCCATGACACCTCTTTCTTCAGGCGTGCACTTGCCCTTGCTGGACCGCAGCATGCCTGACTTCTCCAGCTTCAGAAACGTGGACGACTGGCTGGATGCTATCAAGATGGGCCAGTACAAGGACAATTTCGCCAACGCTGACTTCACTAGCTTCGATCTGGTTTCACAGATGACAATGGAGGACATCCTCAGGGTGGGAGTGACTCTAGCAGGTCACCAAAAGAAGATCCTCAACAGCGTGCAGATGATGAGGGCGCAGATGAACCAGATCCAGTCGGTGGAGGTTTGACCTCCAGGCCTGATCCTGCACACGGAGGCAGGAGGGACAAGTGGACAGATGGAGGTGGATGTGTGCTGAGCCTGATTTTTCCCTCTAGGCCACCATTTTTTCCAAGGGAATCTCCTCTGGTCCTCTCTTCCTAACCCTGCCCTCCATGTTCTCCCCATTCCCCTACAAACCACACAGCCAGCCTTTTGGGCTCACACTGCGAAAGTGTCGTCCCACAGAAATCGACAACACTTCTGCCCCATCCATCAGTTGTTTCAACTGCCAAAACATAGCAAGGAGGAATTTTCACCAACCAAGAGCATGCACATCTTCTTGCTCTTACTTCCTTACGATTagtccttttatttttttttttgtcatctatGTTCTTTCTAATGATTTTactaaagattttttaaagaaaaaaaagctacatgAACAGAAAGATCTATAtgatatatatagatacatgTAATATTGTAGATGGATTTCACTGAAAGGCTACCCTTTAAAAGGGCAAAGTACAACGAAAAGAAAGGTACAACACCATGCAATGTGCTCTGTTATTCTACTTTATTGTGGAAATCATTCAATAGGAATATTGACTACCTGCTCAGAGGCTCCAAATGGAAGAAACCATGGAACCATAATCCCTGTGCCATCATTGAAAAGGCAGAGAAAAGGAGATGAACACCATGAAATGGAAACTTCCTCTTGACtgccacaaagaaaaaaaaagacacttctGTTATTTAGTTGTTTGAAACATCCGtagcaaatacaaaaaacagcaacaaaaaaaagtcttctcTCCTAAATAGTAATCTCGTTGACAGTGTTGACTTTGTAATGAAGATTTCCTCTGCTTCCAGTCACCATGGGAAAAagaccattattttttttctttttacagacGTCATAACCTGCCAAATAGGACATCGTTCTGTCCTACCTCATAGCTCGTAGGTCCTTCTGTACATATCAGATGCGCTTGACATCGGGACATCATCAATGTAGTCACCAAGTGCGTGACTGTTTTCATTCAGGCAATGATGGGGTTAATATGATTGTTCATTTTGTGGTTTTCCCctattttaaatcaaatgtttGTTGTGggttttattaatttagtaCATGAAACATCATATATTGATTCCCTTCAAATATGTAGATATAAAGGAAATTgcttagggtttttttttttattattattattattaatttacgTTTTACATAGAAGGACCTTGAATGAACATaggttttgaattttttttacacagtttcGTCTTCTAAGAGCTCAGCATAGCATTAAACAATCAAATTAGGAGGTCCTTTTCAGAATGACATGGCGTTTTCCACTGGGACGGTACCGTGTACACAAGCATAGTGTTATAATGATTCCAGTGGCCATGGcatcattattattgtaaaatggTACTGTTAGAACACTCAATAAGTGGCTAAATCACTTAAGAACAAGAGGATGAGTACTATGTTTTAAATGTGGTTTGTTTGACTGGACAGAGAGCTAACAGACACTCATAGACATCCCCTAAACAGTGTCTCCAAGGGTACTCAAGATTTCTGCCTTTTTACCAACATGAAGAGCATAAAACATCAAAAACGTGTAAATATCCATGTAAGAAATACGTGTTGGATTTTAGTGtacagaatttttttgttgaaaatgaatgaagagCTGTTAAATCTGGGCCTTTTTTCTATTAGAGAGAGACGATTGGGACTGTGGGATCCATCCTTTAGAATGGTCATAGTGAGCAGTGCGGCAGATACTGAAGAGACACGAAAACCACAGACACCTCCAGCTGTGctacatgatgtgtgtgtgtgtgtgtgtgtcctggcaTGGAGGTCACTTGTGGTTAACAGTGCTCAATTACACTTTGTCTAGCTCAGCTCACCAGAGACTTCCTCCGCTCCATAACCTCAGGGTTGACGTACatctttaatacatttaaaacccCTCAGTACAGCACAGCTAGTCACTTCAACCACACTACAGTTCACATAAGCTCAGTTGGCTGATTCAGTGCTTCGAGTGGAGCAATGTGAACTGATTAATACAGCACAGTGCTCATCTGGCGCCGATTTTCTGACCACAGATGCATCAAAGCCGCTTCTGCTGTGCATCTTCATTTGTTCCCATTACAAGAATTGTTCCACAGAAATATCTGCTTATCTCTAGTGCTATCATGCTGTGTTTATATATCCTGTAGATGGCCATATCTCCAGTAGGCATAAGTCGCAGGTTTAATTCCCCGTCCTGCTTTTGATCAATCCCATTTCTCCGTTTTCATCATTCCTTTTGTCTATCCaggcctctttttttttcaggaagagattattatttatttaatacgtGACTACCAGGATTTTGCCTACAGTGGTTCCATGAATCAGCGTGACTTTTTAATGGGCTGATGGATAGAGACACAGATTATCTCTTCCGAACTTTCTGAAATTCTTCACTGATGCCACACTTTTGCAAGACCCTTAACTCCTGCTCCAGTGCTCCAATATTTAATGGCATCTCAGTCTTCCTTCTTCTTTCATTCGTTCTCTTGTCTCTGTTTGCATACCAAATCACAATTTGCATTAGAAAGAAGAGTGTCTGCATTATGTTTGAATTTCAGTTGCATAGTGAAAGTGATAGGGAGAAAGTAATCTGAAGACtgtttgctgttgtaataaatCAGTGGAAGTGCAGTGTGTTTACCGGCTGTAGTATTAACGGCACTTCAACGTCTGAAAAGTAATGCAGCTTTTATCACCCCTGTTTAATACacttctaaaaaaaatgcactgctTTTGAAATGAAGGGAAATGACATTTGAAGACTTTTCAAAAGTCATACATTCAGGGGCTTAGGGTTTATGTTCATTTGCATAGAATTATGCTGTTTCAAGGAAATAAGGAAGactcactgcaaaaaatataaaagtgaaCATATCTTGATTGGTAAGAGAATGcaatctaatatttctcattatcagacaacaataaaacaaacatataagCTTTATAATCAtgtttctagacatttttacttatTGGAAGCCTCAAATGGTCTTGTGTTTTTGGTAGACAATCaattctttctagaaataaaaataaaataaaataaatctccaaAAGTTCTTGTGATAGTGGCAGATAGTGTTACCACTTTCTAcaagtaaaataatgaaaataaaaaatttgaaatggtttttttgtaatgttatttgttattgcttcttatttcaattatttatttctagGGGGGAAAAACAATATTATCTGCCAATAGCTCTGGTCCATTTCAAGCTTCAGatgtctagaaataggattCATATTTACGATATAGGAGATATTTCCCATTAGGAGATTACGATAAACCACTATGTGCTTTATCGTAATCTCCTAATGGGAAATATAAGATGATTTAAGTATAgtaaagatattttcacttgatatcAGTGCAAGTGTCTCATAATTTTGTGGTGCTTTTTGCGGGTGAAAATATGACCACACAGGATTCTGATATCATTACAGAAAGGTTTGGGTttgaaagagtttttttttttctttcgagAAGATTCTAGCAGGTTGTTAGCTACATATGActgtgttatacagtgtgtattgCCACGGTGTAAAGGTACACCTTATGTGAGGCTCAAACCACTTTGTAACCACAAACtaatttgtgctttttaaagCCAGACACTGTCCTCAGGCACAATGTGAGAGCGCCTTTCTCCAatatttagtctttttcacaTCAGATGCTTCCATTTGTAACTTATCCTGTATTGGCTCTGCTCTACATTATTCACATCCCTTTAAAGTCCCGTTTTTTGCTAAACCCATTAATCAGCAGAGGAGTCCATAACCCATATTCTCTTTAAAAACTCTTTCAGTTCTTATGCGCTAAAAAACAGACTCAGTATTTACACAGGCACATTGAATCTTAACGGTACAGAATATTTTCCTCCCATTGTGTTTTTCAATACTAGAACTGAAGTTTAGATCTCTGCAGGAGTCCAACTGCTTCGTCCATCTTTCCGTTTCACATTCTGTCCATCCCCGATTTACCAGAATGCTATGTAAACTTCGAAGTTGTAATAAATGAGATGTGATTGTAAGAGAGTGAAAGAATATCATGCAGAGCAAGTAAGTGATCCGTATTGGCCGTTTCATTGGATTGTCTGAGCGCAGAACCATAACATACAGACGGTGGAATGTTTAGGTTATTTGTAATGTCACGCTAGTCAGGCTGAGGCCTCAAAAGTTGATCGGCAAGATATCATGTGCTCAACTCAGTGGCATGTGTATACAAACTAAACAGCCACATGTCACAcagcagttattaaaataacTAACAGAGTCATTCAGGTGGTGACAGTTGTGCTGTGTGTACATCTTAACCACCAACGATTCTCCTCTCTCACCGCTGGCAAGTTTAATCATGACTGCCGTGGCACTCTGCTCAGTTTATAAGCCTTTTTGCTAAAAGCTGAGAGCGACAGCAAGCTGTGAACGGCATATGCTCTCGTTCTCTGCAGAACCATTCACCAACTGTGTGCCAGTTGTAAAATGCAAGCGAAAGACCAttttgtctcagtgttacaATGAGCAGTGAATGTAAACACAAGATGTCCCTGGCTCcttctgtcgctctctctccctgGTGTGGCCCGTGTCCTCCAAATATGGTCCAAAGTGTTCAGGAGAGAAAATGGCTCCTAAATGTGGAGCCGTTGCCCGTAGAATAACTGTGCCCTCTGGTGTCTGGATGGCAATACTGCAGTATGGCTGTGATGGAGCTTCCCTGTGTCTCAGCCCTGATCCTGCATGCAGGACAGGGGACAGTTCTCCCTCTGACAGGCAGGGCTCACGTAGAGCTCTGTCCACCCTGACCACTGTGACACACATGGGAGGTCCTGTTTTTgatgtataaaatgtacatttgacTGTAACCCTGTGAATGATGTAACAGTTtcattatttgtaatattgttatcggtttattttctaaaaatgcGGAAAAAAAAGCCCAACTCGACTCTCCTCATTAAAAGTGAAATGAGATCTGTTATAAACCTGTGTCTGATGTCACTTTCTTACATCAATTTACATTTCGGGCTTTGTTCCTGGATTTCCTGGAAATGTCACTTCAGTGATTAGAGACCCTGTGATCTTGTCTGCATCAGTTTACGCCTCACAGGAATGCCACAACAGCTTTTGTGCTAGCGTCCCTGTGTGCTTTTTGGGTGGGGGTTTGAACTCCACTAGTCCACCCCTCCCTCACGCTGGCCTCCAACGTCTACTCACATCTCTCTCCACTTTCCACCCCTCGTTAGCGGCTAGACGTGTGAAAGCCTGCTGACCCCTGAGTAACCTCCCCAAGAGTGGCATGCCTGATAAAAAAGGCGAAGGCTAAGCGAGTTCAGGAGTTCACCATCGGGAACCTGATGACAGTCCAACAGCTCTTCTGGTTTAATCCAGCCCACCCGTGTGCCCCCTTTTTACGCCCTGTTAAACACCACAAGCAGCAACAGCAAAGCCGCCAGATCTTTAGCATGTTGTAGAGATTGTAGATCTGGCTGATTGTCCACCTGAGACAGCTCTACTGGAAAAGCCCTTGGATTAGTGAAAAAGATCACGTTTAACACAGAGTGATTTATAGCGGAGAAATCACCCTCACACAACCTGCCATGCAAAACATTTAGCACAAGACTACTTTTTTCCATACACCATTTCTTGTCAGGATCATTTTTAAGAGATTGCGTCTCGGTCAAATTCACACCGAAAGGAAATTGTAAACCTAACCGAGCAGTGATCATAAGTTTCCCTGTGTGATTCTCTTCTTTTGAATAGCTGCTAATAGTGCTCCCTGCTATGTAATCATCACTGATCAATGCTCGGGCGCCTCCATTGTCGCACATGTGCATCCTGCAGACACTTAATAGCAACTATGGACAATTAAAGAGCAATCAGCAGCGCTTTGGACTGTGATGGCTGTAGAGTTTGCCTCCAATTCAACCATAAGGTGCCTTTGGCAAGCCAGCTATAACTGTGGATGATCATTTGTCATTGGTGAAAAATGTTTAGCCTGTAATGAGTAGTTTTTTCTGGCTTGCTCGGTTCCCTGTGATGCTTTGAGCCTGTCGTCCCCTGCCATTAAGAAACACTTTCGAATCCTCTGATCTGCATAACAGCAGCTTTGCAGTTCTGTAGTCAAAGCACAATGCTAATTAATCATGGGAtccttattttattcttattaactcttttttttttttcttacataggGCAGACTTTTGCAAAAGAGAAGCAatcattttgtttctgttaCTTGGAAACATGgcttaaatgtaatataatgataatatagcATAATGTATTCATCTATGATGCTTCATCAGTTCTACTTCATCAGTTCTACAGTTTTATTCAATGTCCAAATCGTATAATAAACACAGTCCAGTAAATGTTCCAGCCCAGGGTAGGCATTTCAGAGAGGCAAGTACAAGGTCAAATCAAGAAGTCTGGCAGTAGGGCTTAGACCAATTTTATAATGTCTGCCTCTAGGGAAAGCCAACAAAACTGTATGTTTTACAGTGCGCATTAAGACAGTGCAATAACAGGCCGTCTTTATTTCAGATTCGGTTCCACGTTCAGCCTACAGGATGCGGTAGGTTAGGGCGTAGACCGTTTCCTTGTTTCAGTGATAGCAGTTGTTCACCCACATTTCATGGAACTGTGGAAAATGTTGGCTTTGGCACAACTGTATATAATTGAGATGGAACATAAGATGGCAC

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363151 lncRNA upstream 111155 12154295 ~ 12154550 (+) True G306433
TU363147 lncRNA upstream 113536 12143548 ~ 12152169 (+) True G306432
TU362985 lncRNA upstream 323412 11942035 ~ 11942293 (+) True G306300
TU362980 lncRNA upstream 328294 11937184 ~ 11937411 (+) True G306295
TU362975 lncRNA upstream 335504 11929712 ~ 11930201 (+) True G306290
TU363205 lncRNA downstream 24104 12437199 ~ 12448374 (+) True G306479
TU363232 lncRNA downstream 159327 12572422 ~ 12573759 (+) True G306503
TU363513 lncRNA downstream 384653 12797748 ~ 12797982 (+) True G306744
TU363525 lncRNA downstream 491113 12904208 ~ 12904841 (+) True G306756
TU363733 lncRNA downstream 783380 13196475 ~ 13283007 (+) True G306938
XM_026932486.2 mRNA upstream 80561 12177090 ~ 12185144 (+) True nmur3
XM_026932911.2 mRNA upstream 168949 12067624 ~ 12096756 (+) True alpl
XM_026932863.2 mRNA upstream 468271 11794011 ~ 11797434 (+) True barx1
XM_026932864.2 mRNA upstream 468271 11794017 ~ 11797434 (+) False barx1
XM_034314330.1 mRNA upstream 594246 11608924 ~ 11671459 (+) False fbln2
XM_026932997.2 mRNA downstream 4515 12417610 ~ 12427033 (+) True mcrs1
XM_026932875.2 mRNA downstream 21414 12434509 ~ 12454321 (+) True suox
XM_026932874.2 mRNA downstream 21417 12434512 ~ 12454321 (+) False suox
XM_026932892.2 mRNA downstream 60961 12474056 ~ 12485975 (+) True prph
XM_034314397.1 mRNA downstream 83214 12496309 ~ 12527278 (+) True timeless
TU362774 other upstream 749892 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 784605 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 939345 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 950269 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 1044190 11215015 ~ 11221515 (+) False dynlrb1
TU363207 other downstream 44506 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 1957693 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 2101515 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 4076266 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 4076266 16489361 ~ 16494139 (+) False amigo3

Expression Profile