RNA id: XM_026932646.2


Basic Information

Item Value
RNA id XM_026932646.2
length 1831
RNA type mRNA
GC content 0.46
exon number 14
gene id nisch
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13816855 ~ 13846632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTAGACACTAAACTACAAGAGAAGAGGGAAATGATCTGTTATCTGCTGGAATCACAACAGACCCGCAGGGGAACTGAATGTTTTCTCTGGGTGTCTCGTGCACCATATGTACATTAGCCATGCACTGTCGTCCTGCAGGTTTTGTATAATGGTGTAGTGCAGGTTTAACCTGGTGAACATGGACTGCGCGGCGTTTACGGAGCAAAACACAGAAAGAAGTGTTTGTATCGTTGGATCGGAGCTAGTGGAGAACTACACGGTTTATATAATCGAGGTGAAGGTTGGGGATCACCGGTGGACCATAAAGCATCGCTACAGTGACTTCTATGAACTGCATGAAAAGCTTACTTCAGAGAAGAAGATTGACAAACATCTGCTGCCTCCTAAGAAGATAATCGGTAAAAATTCCAAAACCCTTGTGGAAAAGAGGCAGAAGGAGCTGGAGGTGTATCTGCAAACTTTGCTCAACCGATTCCCTGTGGCTGTACCAAAAGTTTTATCCATCTTTCTACACTTCCAGTTCTATGAAATCAATGGCATCGCTGCTACCCTGGCAGAAGATCTGTTCAACAGAGGTGAGCAGTTGTTAGTTGCCGGTGAGGTTTTCCTCCTGAGGCCGCTGCAGCTCTATGCCATCACACAACAGCTGAAGCTGGCCAAACCCACCTGTGCCAATGGAGATGCCAAGGCAGATCTTGGCCACATACTGGACTTTGCCTGCAGACTCAAATATCTCAAGATCCCTGGGACGATAGGAGTTGTGGGCACCAGCAATATTGAGGAACACAGGCTACCATTTGACCTTTCTGTCTTTAAATCAGTGCTCCAGATTGAGataaATGACTGCAGCTCAGGACAGATAAGGGGACTTCCTGCATTAAAGCCCACTCTGGCTACACTCAGTATTCATCGTTCAGCTGCGTccatgaagGAAATTTTAGTTCCCGAAGCTGCTGAATTTGCCCAGTGGGAGCCTGAAGGCGTGGACATTGACTGTACAGTGACAGCAATCATTCCAACCTGGAAGATACTGACCACCCTGGACATGAGCCACAATAACATCTGCTGCATCGACGAGTCTGTGAAATTGATTCCTGCAGTTGAATTCCTTGATCTTGGACACAATTTCCTGTCATTGGTGGAAAATCTCCAGTATCTATACAACCTAGTGCACTTGGACCTGTCCTATAACAAGCTCACAGTCCTCGAGGGTGTTCACACTAAACTGGGCAACATCAAGACTCTGAATTTGGCGGGGAATCAGCTTGAAACTCTTTCTGGTCTCAGTAAACTTTACTCTCTTGTGAACCTGGACTTGAGCAGTAACAGATTAGCACAGTTGGATGAAATAAAGTACATTGGAATGTTGCCCTGTTTGGAAAAACTTTCCCTTGCCGACAACCCCATGTGCATCATTCCTGACTACAGAACTAAAGTTTTGGCACAGTTCTGTGACAGAGCATCAGAGGTTTGCTTAGACGGCACAGTAACCACTGAGAAGGAGCTGGATACTGTCGAAGTGCTGAAAGCCATTCAGAAAGCCAAAGAAGCGAAAGACAGAATggcaaacactgaaaaaaagATTAGTGATGTCCCCAGACAGACTGATGCAGGGCTGAATCCCTCATCCTCCAGCTCCGTCGCTGCTCCgcagtcttcttcttcttcttcttctccgcTTCACTGTGCCAGCTCCAGCCAAGGTAATCATAAATAGCCTGCAAAGATGACGCCTTTCTTACCAAAGAGATATTGACTCATGTGGATTCTACACTTACCCAGCGATGCTGTAATAACTACCCCACAGCCTGTGAGGTTGCACCTCAGGT

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364036 lncRNA upstream 123943 13691106 ~ 13692912 (+) False ippk
TU363977 lncRNA upstream 292801 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 315024 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 466175 13350453 ~ 13350680 (+) True G307079
TU363759 lncRNA upstream 483607 13332806 ~ 13333248 (+) True G306961
XR_004580226.1 lncRNA downstream 106935 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 170117 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 181671 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 218344 14051835 ~ 14058202 (+) True G307293
TU364114 lncRNA downstream 262779 14096270 ~ 14096786 (+) True G307281
XM_034314436.1 mRNA upstream 23936 13776496 ~ 13792919 (+) True nol8
XM_026932944.2 mRNA upstream 23936 13776628 ~ 13792919 (+) False nol8
XM_026932945.2 mRNA upstream 23936 13776628 ~ 13792919 (+) False nol8
XM_034314437.1 mRNA upstream 59332 13753968 ~ 13757523 (+) True ogna
XM_026932584.2 mRNA upstream 68122 13745004 ~ 13748733 (+) True omd
XM_026932816.2 mRNA downstream 18729 13852220 ~ 13939822 (+) True stab1
XM_026932632.2 mRNA downstream 232130 14065621 ~ 14080135 (+) True rbck1
XM_026932633.2 mRNA downstream 233874 14067365 ~ 14080135 (+) False rbck1
XM_034314000.1 mRNA downstream 258444 14091935 ~ 14096019 (+) True bloc1s1
XM_026932805.2 mRNA downstream 268564 14102055 ~ 14112510 (+) False rdh5
TU363207 other upstream 1354319 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2301042 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2335755 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2490495 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2501419 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 537297 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 681119 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2655870 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2655870 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3427488 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile