RNA id: XM_026932671.2


Basic Information

Item Value
RNA id XM_026932671.2
length 2533
RNA type mRNA
GC content 0.47
exon number 7
gene id pparg
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13440659 ~ 13476589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGCAACGCGCACAGAAAGCTCTGCTCTCAGCATCAGCGCAGAGGCAGCACCTGCCATCGGGCGATAAAACCACAGCACTTCAGCTCAAAAAGTTACCGAGGAAGGGTTTTAACCGCCAACACGGACTGTTACACGGTTAACGGAGGTGGAGAAACACCGGTGTGGACCCACAGCACCAGGGAAGAGAGACCCGACAAGAGAGAGCACGTTAAACGCACACACGCAGATATGGTGGACACACAGACATTCTCCTGGCCCATGGGATTTGGCCTAAGCGCTCTGGACCTGGAGGGACTTGACGACAGCTCACACTCTCTGGACATGAAGCCTTTCACCGCACTCAGTGACTATACACCCATCTCTGGCATCGAGTACGCACCCAGCCCGGGCCAGAGCGAGACAACGCACATGATGGATCTGACGCACATGTACAACTACAGAGCCCAAGAGAACAACTATAGAGCCCATGAGAACAGCTACAGACTGCAAGAGAACAGCTATAGACCGCAAGAGAACAGCTATAGAGCACAAGAGAGCAGCTATAGAGCACAAGAGAACAGCTATAGCACACAAGAGAACAGCTATAGAGCACAAGAGAGCTGCTATAGAGCACAAGAAAGCAGCTATAGAGCACAAGAGAACAGCTATAGAGCACAAGATATCAGCTATAGACCACAAGAGAACAGCTATAGACCACAAGAGAACAGCTACAGAACTCAGGAAGACAACTACAAAGTACATGAAACCCAAAGTTCGATTAAACTTGAGCCCGAGTCTCCACCACAGTATGCAGAAAACAGCATGATGTTCACAAAACAGCATGAAGATCCTTCCACCTCGGTTTTAAACATTGAGTGTCGAGTGTGTGGGGACAAAGCTTCAGGATTCCACTACGGGGTTCATGCCTGTGAGGGATGCAAGGGGTTCTTTCGCCGCACAATTCGCCTAAAGCTAGTCTACGATCATTGTGACCTGCACTGCCGCATCCACAAGAAAAGTCGCAACAAGTGCCAGTACTGCCGCTTCCAGAAGTGCCTGATGGTGGGCATGTCGCACAATGCCATTCGCTTTGGCCGCATGCCCCAGGCAGAGAAGGAGAAGCTCTTGGCTGAGGTTTCCTCCGATCTGGAGCACATGCACCCGGAGGCGGCTGACTTAAGGGCCCTGGCCAAGCATCTTTACGAGAGCTATCTGAAGAACTTCCCCCTGACCAAAGCCAAGGCCAGGGCCATCCTCTCAGGGAAAACCAGTGACAACGCTCCGTTCGTTATCCATGATATGAAGTCTCTGCTAGAGGGTGAACAGTTCATAAACTGTCGTCAGATCCCACGGCAGGACCATCACAGGCGTCTGAGCGTGAGCTCGGTTCAGTCGGACCTGCAGCGCGAGGTGGAGCTGCGATTCTTCCACAGCTGCCAGTCACGCTCAGCCGAGGCGGTCAGCGAGGTCACAGAGTTTGCCAAGAGCATCCCGGGCTTCCTGAACCTCGACCTCAACGACCAGGTGACACTGCTCAAGTATGCAGTCATTGAAGTCCTCATCATCATGATGGCACCGCTCATGAACAAGGATGGCACGCTTATCTCATACGGCCAGATCTTCATGACACGCGAGTTCCTCAAGAGCCTGCGCAAGCCCTTCAGCGAGATGATGGAGCCCAAGTTTGAGTTTTCTGTCAAGTTTAACATGCTAGAGCTCGACGACAGCGACATGGCTCTCTTCTTGGCCGTCATTATTCTCAGTGGAGATCGTCCAGGCCTGCTGAATGTGAAGCCCATTGAGGATCTACAGGAGAATGTTCTCCATTCACTGGAGCTCCATCTTAAAATGAACCACCCGGACTCCCTCCATCTTTTTGCCAAAGTCCTGCAGAAGATGACTGACCTGAGGCAGATCGTTTCCGACCACGTTCACTTAATTCAGTTGCTCAAAGAGTCTGACATCAACATGTGTTTACATCCACTGTTGCAGGAGATCATGAAGGACCTGTATTAGTGTATGGATTGGCTTGTATTAGCTGAACACTTGTGATCATGCTgagggtctttttttttctcccatctGTGAACAGACAGAGGAAGATGGAGTAATCAGTTTAGCAGTATCAGCATGTTAAACAGAGAAGGTCACTTCTACAATGAGTGAAATTCTGCTATAATGGGAAAGcaaatatattctatattttattgggttaaaaaaaatgtgtgcaagTATTTGGAAAGAGCTGCCTGTAAACCTGGATtggaaatagttttttttttcccaagagaGCGCACCTTCATTTATATTGTTTGCAAAAGAGAGAGTTGGAGAGTTTTAGGAGttagtaataaaaatgtgacatgTGATAAACCAAACATAAACCTAAATGATATAAAGTTTTAAATTCTTTGCTGACATGAACagcttaaaataatattatctGTGACAGTTTTGTACATTGTTCTCACTGGGGAATTATATATGTGAAAGCTTTAATTTTTGATTCTATAATGCCTTTtgtaaatacaataaacaaatttttaatgCCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070328 triglyceride homeostasis biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08530 NR1C3, PPARG; peroxisome proliferator-activated receptor gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363884 lncRNA upstream 89979 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 106414 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA upstream 107411 13332806 ~ 13333248 (+) True G306961
TU363732 lncRNA upstream 147220 13288789 ~ 13293439 (+) True G306937
TU363733 lncRNA upstream 157652 13196475 ~ 13283007 (+) True G306938
TU363969 lncRNA downstream 24877 13501466 ~ 13501831 (+) True G307154
TU363977 lncRNA downstream 45420 13522009 ~ 13524054 (+) True G307161
TU364036 lncRNA downstream 214517 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 463837 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 527019 14003608 ~ 14003831 (+) True G307272
XM_026932625.2 mRNA upstream 15177 13358924 ~ 13425482 (+) True syn2b
XM_034314075.1 mRNA upstream 161558 13167155 ~ 13279101 (+) True atg7
XM_026932905.2 mRNA upstream 278967 13140570 ~ 13161692 (+) False hrh1
XM_034314385.1 mRNA upstream 278967 13140721 ~ 13161692 (+) False hrh1
XM_034314384.1 mRNA upstream 278967 13147251 ~ 13161692 (+) True hrh1
XM_026932920.2 mRNA downstream 4822 13481411 ~ 13495985 (+) True tsen2
XM_026932921.2 mRNA downstream 5028 13481617 ~ 13495985 (+) False tsen2
XM_026932541.2 mRNA downstream 31820 13508409 ~ 13521412 (+) False mkrn2
XM_026932539.2 mRNA downstream 32203 13508792 ~ 13521412 (+) True mkrn2
XM_026932540.2 mRNA downstream 32205 13508794 ~ 13521412 (+) False mkrn2
TU363207 other upstream 978123 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1924846 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1959559 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2114299 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2125223 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 894199 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1038021 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3012772 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3012772 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3784390 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile