RNA id: XR_004580240.1


Basic Information

Item Value
RNA id XR_004580240.1
length 2185
RNA type misc_RNA
GC content 0.49
exon number 10
gene id asic1b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14179783 ~ 14476817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGCTCATTCTCTTTAGAAGGTTTCAGCCTCTAGATTTAGGTCTTTGAACGCATTGGTAGCATGACCTTCTGAGTTCTGATTCATTCTTCTAGCAAGATTGATCAGGTAAATTTTTTTTGAGGAACTTTAAACCAAGAGGATGGTGTCCTAAGCGAAACCGAGCTATGTTATAAGGATCATTTTACTTATTCCCCTTCTGCGCTACGAATCATTTTGGACTTTCCTTGGTGTCATTGACTCTTAACAAGGAAGGTCATAACCCATCAAGCTGTGTATCACTGCACTTTGCTTCAAAAGCCATCTTTTCTGTGGTGGACCCGTCCCTACTGCAAACAAGCATTCTCTTGATCTGGACAGTTATTCTTGAAGTTTGCCAGTTTCAATCATGGTGCGAATTACATGCACAATCTCGGTTACAACAGGAGATGAGCCCACTGCAGGGTCTTACGCGAGCAGCTTTGATGACCACTACAAAAGGGTAGTGCGGAGTGGCGACAGCGATCCAGGGCTTTACAAGGAAGAGTGTGATGAGCTGGAGGTTTacgaggaggaggaagaagaagagccACCTAATATTGACTTGGCAACCTTTTTCAGTGGTTGTTCCCTTCATGGTGCCAACCACGTCTTTGTGGAGAATAAGAAGTTTGGAGTGAGGCAGGGTCTCTGGGCAGTGTGCTTCCTGGTGGCCCTCTCTCTGTTCTTGATCCAGGTGGGTGACCGTGTTGTCTATTACATGCAGTATGACCATGTTACCATGCTGGATGAGCGCAATGCACCCAACATGACCTTCCCAGCCATCACTCTCTGCAACTACAACACCTTCCGTCGTTCCCAGATTAGCTACAGTGACCTGCTCTTTATGGGACCACTCATAGGGTATGAGGACAACATGGCACCTGGGTTCCAGCTTGCCCCTGAGCCTGATCGCCAAGGTGCCCGGTTCAGCATGGCCGAGTTCTATAACCGGACGCGACATCGTATGGACGACATGCTTCTGGAGTGCAACTTTGCTGGAAAGGATTGTGGCCCTGAGCACTGGAGAGAGATCTTCACTCGATATGGCAAATGCTACACATTCAACTCTGGCCAGGATGGACAGCCACTCCGTATCACCACGAAAGGGGGTATGGGCAACGGCCTGGAACTAATGCTAGACATTCAGCAGGACGAGTACCTGCCAGTGTGGGGAGAGACAGATGAGACGTCTTTTGAAGCCGGCATCAAAGTGCAGATCCACACTCAGGATGAGCCGCCTTTCATTGATCAGCTGGGATTCGGAGTGGCGCCAGGCTTTCAGACGTTTGTGTCCTGCCAGGAGCAGAGGTTGACCTACCTGCCCCCTCCGTGGGGTGACTGCAGGTCCGAGCCCATGGACTCAGACTTCTTTACTACCTACAGCATCACAGCATGCCGCATCGACTGTGAGACGCGCTACCTGGTAGAGAACTGTAACTGTCGCATGGTGCACATGCCTGGAGATGCTCCATATTGCACGCCGGAACAGTATAAAGAGTGTGCTGATCCAGCTTTGGATTTCCTGGTGGAGAGAGACAatgattactgtgtgtgtgagacacccTGCAACATGACACGCTATGGCAAAGAGTTATCCTTCGTCAAGATCCCCAGCAAGGCCTCGGCCAAATACCTGGCCAAGAAGTTCAACAAGACAGAGCAGTACATTGCGGATAACATCTTGGTTCTGGATATCTACTTCGAGGCTTTGAACTATGAGACTATTGAGCAGAAAAAGGCCTATGAGCTGCCTGGATTACTGGGTGATATTGGTGGTCAGATGGGTCTTTTTATTGGAGCCAGTATTCTGACAGTTTTGGAGCTCTTTGACTATCTTTATGAGGTGATCAAGTACAAGCTGTGCCGTTGCAGGAAGAAGAACCACAAACGCAGCAACAACAACGACCGAGGAGCCGTGCTGAGCCTGGACAACGTGCAGTGCCATGTCAGTAATGAACAAGTGAACACTCCGGCATAGAGAGGAGCGTGAGAGAGAAATAGGAGAATGGGGGATAAAACAGATGACAGAATGACTGATTAATCTCAAATATAACGTCAAAAGccTCCATGTGAAAATCTTCGTACTCCCTCTACATATCCGGCCAACATCCTACCTCACCATCCAGGGCAGGGCAACTTCGAGGACTTCAcctgctgagtgtgtg

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364494 lncRNA upstream 222343 14148141 ~ 14148445 (+) True G307588
TU364114 lncRNA upstream 274002 14096270 ~ 14096786 (+) True G307281
TU364127 lncRNA upstream 312586 14051835 ~ 14058202 (+) True G307293
TU364094 lncRNA upstream 354394 14015162 ~ 14016394 (+) True G307262
TU364104 lncRNA upstream 366957 14003608 ~ 14003831 (+) True G307272
XR_004580186.1 lncRNA downstream 107182 14583567 ~ 14590821 (+) True LOC117599878
TU364901 lncRNA downstream 112640 14589025 ~ 14589232 (+) True G307971
TU364909 lncRNA downstream 122008 14598393 ~ 14598612 (+) True G307976
TU364930 lncRNA downstream 223612 14699997 ~ 14780758 (+) True G307997
XR_003403804.2 lncRNA downstream 284446 14760831 ~ 14763174 (+) True LOC113537908
XM_026932802.2 mRNA upstream 238781 14114476 ~ 14132007 (+) True gls2b
XM_026932805.2 mRNA upstream 258278 14102055 ~ 14112510 (+) False rdh5
XM_026932804.2 mRNA upstream 258278 14102055 ~ 14112510 (+) False rdh5
XM_034314418.1 mRNA upstream 258278 14102076 ~ 14112510 (+) False rdh5
XM_034314419.1 mRNA upstream 258278 14105179 ~ 14112510 (+) False rdh5
XM_026932749.2 mRNA downstream 18878 14495263 ~ 14513735 (+) True smarcd1
XM_026932750.2 mRNA downstream 22159 14498544 ~ 14513735 (+) False smarcd1
XM_026932839.2 mRNA downstream 38207 14514592 ~ 14524976 (+) True gpd1b
XM_026932523.2 mRNA downstream 56325 14532710 ~ 14573427 (+) True cers5
XM_026932527.2 mRNA downstream 99949 14576334 ~ 14579348 (+) True LOC113537860
TU363207 other upstream 1908252 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2854975 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2889688 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 3044428 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 3055352 11314184 ~ 11315436 (+) True G305863
TU364869 other downstream 38225 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2012976 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2012976 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 2784594 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 4211012 18687397 ~ 18692014 (+) True snrpe

Expression Profile