RNA id: XM_026932696.2


Basic Information

Item Value
RNA id XM_026932696.2
length 2455
RNA type mRNA
GC content 0.51
exon number 23
gene id mmel1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20004405 ~ 20022989 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACACACAGTCCCACTGGCATCCAGCCGTCTGCATGCTGCTTCATTTCTCCACACACCAGCTCTGGGTGAAAACCTAGAAGGGGTGTTGGAGAAATTGAAAGGCGTCCAGAGAGGGTCGGCCCCCAACccccaaaaaaaccccagagAACTCACAGAATGGGAAAATCCGAGAGCCAAATGGATATAATGGAAAAAACAACCAAGCCGAGGAAGCATCACTGGACCGTAGTGGAGATCGGCCTGTCCGTTATATTACTGCTGATGAGCTGCGCTTTGGCGGGACTGGTCGTGCTTTACGCTTCAGCGCTCAAAGattattCATATAGAAATGGTGCATCAAAAGGCCTGGAGTATCGCAGGAACCCAGACACCACCGTGTGCACAACCCCAGACTGTGTCACTGCagCGGCAAGGTTACTGCACAACATGGACCAGAGCGTGGACCCGTGCCAGAACTTTTACCAGTACGCATGTGGAGGCTGGCTGGAGAGGCACGTGATCCCCGAGACCAGCTCGCTCCACAGCGTCTTCAACATCTTGAGGGACGAGCTGGAAATTGTGCTCAAGGGGGTTCTGGAGACACAAAGCGAACGTGACCGGGAAGCTTTCAAGAAAGCCAAAGTGCTCTACAGATCGTGTAtgaatgagaGTGTGATCGAGCAGCGCGACTCGCAGCCCCTCCTCAAGCTCATTGACAGTATTGGTGACTGGCCTGTAGCCTCTGAGGACTGGAACAGCACAGCAGAGGAGTCCTGGAGTCTGGAGCACATGCTGGCGTCCCTAAACTCTCATTACAACAAGAAGATTTTGCTGGAAATGTTTGTTTGGCCCGATGATCGAGACTCAAGCCGCCACATCATTCACATTGACCAGCCATCTCTAGGAATGCCCTCAAGAGATTATTACCTCAATGATGGCAACTACAAAAAGGTGCGTGAGGCCTACCTGCAGTTCATGGTTTCCATGGCGAAAATAGTACGGGAGGACAGGAACCTCACCCAGGATGACGAGCGCGTGTGGGAGGACATGATGCAAGTGATGGAGCTGGAGAGAGACATCGCTAATGCCACGTCTCCGGCCGAGGAACGCAACGACATCACTGTGCTCTACAACAAAATGACTCTGCGGGACGTGCAGGAGAGCTTTAACCTCGGCggttTTAACTGGACCCGTTACATCCAGGGCATCGTGGCAAGCGTTTCCATCACAGTGCAGCCTGACGAGCCCGTTGTGGTCTACTGCTCACCCTACCTCGAAAAGCTCGACACTGTGCTTTCTAGATACAACCGCAGgACTGTGCAGAATTATCTGGTCTGGATGCTGATCATGGAGCGAGTCAGCAGCCTGAGTCGACGCATGAAAGACGTCCGAGCTCACTACAGAAAGGCTTTACATGGGACCACGGTGGAAGAGGCACGCTGGCGTGATTGTGTGCGCTACGTCCAGAACAACATGGAGAACGCAGTAGGGGCTCTGTACGTACGCGAGACCTTTGCTGGAGACAGCAAGCGCATGGTTGGTGAATTGATCAAAAAGATTCAGGATTCTTATGTGGAAACATTGGAAGAGCTGAACTGGATGGACGATCAGTcgaaagagaaagcaagagagaagGCGATGTCTATCTCAGAGCAAATTGGCTATCCGGATTATATCCTGCAAGAGGACAACGAGAAGCTGGATCAGGAATACGTCCACCTGAAGTTCAGTGAAGAGAGCTACTTTGAGAATGTTCTGGAAAACCTTCAAGCAACTGCTCAGAAAGCTCACAAGAAGCTACGGGAACCTGTGGATCCAGAGCTGTGGATCATTGGTGCAGCTGTGGTCAATGCTTTTTACTCTCACAACAGAAATCAGATCGtgtttcctGCTGGAATTTTACAGCCTCCTTTCTTCAGTGAGAAACAGCTCCAGGCCTTAAACTTCGGAGGAATTGGAATGGTTATAGGACATGAAATCACTCACGGCTTCGATGACCATGGTCGTAACTTTGACAAAGATGGAAACATGTACAACTGGTGGAGCAACTTCTCCACAGAGCAGTTTGAGGAACAGTCCAAATGCATGGTGCAGCAGTACGGCAAATTCAACTGGAAGCTTGCAGGAGGTCAAAATGTGAGTGGCATCACCACTTTGGGGGAGAACATTGCTGATAATGGAGGAGTTCGGCAAGCGTATAAGGCGTACATGAAGTGGGTGGAGAGGGAAGGTGAGGAGCCTCGTCTTCCTGGTTTGGACATGGATCATAAGCAGCTCTTCTTCCTCAACTTTGCCCAGGTCTGGTGTGGAGCATGTCGCCCTGAATATGCCATTCAATCCATCAAGACCGACCCCCACAGTCCTCTGGAGTACAGGGTATTGGGCTCCTTGCAGAATTTTGAAGCCTTTTCCGAGGCGTTCCAGTGCCAGAGAGGTACTCCTATGAACCCAGAGGAGAAGTGCAGAGTCTGGTAG

Function

GO: NA

KEGG:

id description
K08635 MMEL1, NEP; neprilysin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368586 lncRNA upstream 8135 19996064 ~ 19996270 (+) True G311225
TU368568 lncRNA upstream 40737 19962514 ~ 19963668 (+) True G311207
TU368565 lncRNA upstream 43090 19961101 ~ 19961315 (+) True G311204
TU368245 lncRNA upstream 98639 19899878 ~ 19905766 (+) True G310905
TU368246 lncRNA upstream 98639 19899878 ~ 19905766 (+) False G310905
TU368581 lncRNA downstream 4907 20027896 ~ 20028312 (+) True G311220
TU368598 lncRNA downstream 14216 20037205 ~ 20056574 (+) True G311227
TU368604 lncRNA downstream 47984 20070973 ~ 20071359 (+) True G311232
TU368619 lncRNA downstream 86972 20109961 ~ 20110224 (+) True G311246
TU368607 lncRNA downstream 96394 20119383 ~ 20177272 (+) False errfi1a
XM_034313999.1 mRNA upstream 109985 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932462.2 mRNA upstream 135924 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA upstream 135924 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA upstream 135924 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_026933004.2 mRNA upstream 169976 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_034314369.1 mRNA downstream 18350 20041339 ~ 20053146 (+) False slc45a1
XM_026932557.2 mRNA downstream 18350 20041339 ~ 20050611 (+) True slc45a1
XM_026932955.2 mRNA downstream 112678 20135667 ~ 20145354 (+) True errfi1a
XM_026932768.2 mRNA downstream 156919 20179908 ~ 20237403 (+) True pax7a
XM_026932769.2 mRNA downstream 156919 20179908 ~ 20237403 (+) False pax7a
TU368156 other upstream 220492 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 220492 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 487246 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 916599 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1312391 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 847663 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile