RNA id: XM_034314326.1


Basic Information

Item Value
RNA id XM_034314326.1
length 2632
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC113537968
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18708742 ~ 18741557 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgtctctctctctcagcagtgACATGAAGGCAGAGCGGCAGCGGAAATCAGACATAAGAGTTCATTGAATAGTTGCAGAAAAAGGTGAACAAATAGGCAGCAGCCAAAGTAAATCATCACTATTGTCCTACTGTTCAGCAGAAAGGGGTCATTACTTTTCTTGAATCAGCGACTACAAATTCATTCTTTCTCATTCAGCCTTCTGGTCGAATCAGCAGTGAGTGATGCAATAATGTGTGAGCCCAGTCCTCCTGCGATACAACCCCATGCTGGTGGTAACGTGACCATGGTGGGCATTGGCATCAAGCTGGAGGAGGCGCCTGGAGATGGAGGCGGAGTCAGGGAGTCACAGCAGTCCTCGCCTACATGCGATTGGTCATCACGGCCGCCAGCCGAACGAGACGATCCTGAGAAGTCAAAGACTCGCAGCACTCAGTCCCCTTCGGCAGGTTCACCTAGCAAAgagcaagcacacacacttagtcCCAGCAGTCAGGATGTGCTGAACAGGCCCAACAGCAGGCCCGAGGCCCAGCCGAATGTCAGCGAGGTGCTGCCCACAATTGAGAAAATCCTGAACGCAGACTGGAGAGAGAAGATCTTGGGAAAGGGATTGCAAGGCACTGCCAATGTGAAAGgcactCCAGAAAGCCTGGCTGAGAAGGAGCTTCAGCTGTTGCTGATGATTAACCAGTTGTCTGGGCTGAGGGAGCAGTTGCTGGGAGCACACTCGGAGCAGAGGAACATGGCCGCCCTGCTCCTggagaaacagcagcagcagatggAGCTGGCCCGACAGCAGCAGGAACAGattgctaaacagcagcagcagctgatcCAACAGCAGCACAAGATCAACCTGCTGCAGCAGCAGATCCAGCAGGTGAATTTGCCCTATGTGATGATCCCGGCTTtccacccaaacacacagccacTGCCCGTGTCCTCTGATACACAGATGGGGCTCCCGCTTCAGCCCATTCCCTGCAAGCCAGtgGAATATCCCATGCATCTACTCCCAAACCCTCACTCCACCCCTATCAAAAGATCCAGTGGTACAGTCTTTCGACAGGAGAGCAGTCAGCCATTGAACCTCACAGCCAAACCCAAGAGCCCCCAGAGCCTGGATCTTCCATCTTCCCACCTCCAGTCCACCTACAGGACTAGAGAGCTACAGCACAGCCCCCCTCGACCTGCGCTTAGCCTGGGCTTCTTGGGAGAGGGGGATATTGTGAGCCAAACCATCCATGAAGCCCAGCAGCTGTTGCGAGGAGGCCAAGGTCCAGCGGGCCGAGAGAGGGACAGCAGCACAAGGCTGAATGATTATAAGGAAGCATCCCGAGCTGACCGCATACTCCATGCCGACCGCGCGGAGGACGGACAGTCCATACGGACGAATGACGAGCATCTCAGCAGTGACTCTGAAGGACAGATCGTCTCTGGAGTGGGAGGCTACACCGACAGCCGGAGCTCCTCTTCCGGACACATCAAGAGACCCATGAACGCCTTCATGGTGTGGGCGAAGGACGAACGCCGGCGCATCCTACAAGCCTTTCCTGATATGCATAACTCAAGCATCAGCAAGATCCtggGCTCACGCTGGAAGTCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCCGGCTGAGCAGACAGCACCTGGAGCGCTACCCAGACTACAAGTACAAGCCCCGGCCGAAGCGCACGTGCATCGTGGAGGGCAGGCGGCTGCGCGTGGGCGAGTACAAAGCCATGATGAAGAGCCGCAGGCAGGAGCAGCGCGCTTCGTACCCATCCAGTCAGTCAGATCAGCAGCTGCACTACTCCACGGGTGAGGCTCCGTACTCCACCAAAACCATGTCCATGACGCTGCCTCTGCACCCTTCCCTTCTGGAGCACTACCTCCCTCGTTCCCTCGAGCCACCCCAAGCCCCACGTGGCCCAGAGGAAGCGGACGGGCCCCGTTCCAAAGCGCCGTACAGCGAGGGAGAAGAGAGTGACGGAGGAGAGCGCAGCGAGGGCGAGCTGGTGGTTCTCACTGACTGACAGGGGGGCGGGATGAGAGAACAGGGTGCTGTGAGGTGAAATGTTTGGGTTTCTGGGGCAAGGTGCTTTCAGGTGTTGAGGGCTCACAGTTCACCGAGGAGTGAATCTTTGCTTTTCCTAGACTACTTTACGCCAGCGGTGATGACAATGTTGAGGGAcggcttattaaaaaaatgctagttatttaaaataataataataataataaacgcaTTTGACAGTCCTTCAGTGCTGCTGTTGGTCAGCGTGCTGCACTTTCCTTCAGTGAAAAGGGCTTTAAAATGCAGATCAGAGGAAGAAATGAGCATATGTGCAGCAGATAAACACTGGGAAATCAGGCTTAACAGTGTTATGCTAAATTGCATAAATGCATACTATTTACACCAAAATGTATCCTGTCAATGTGTAACGCTTACAACTTAGTTTTGCACTAGGGCTACCAGACGAATGGAGCGAACATTAATGGAAACGTATGCAAAAATGCTCTTTTTGGGTGCAAATCTATAGAAAACGTTTCATTATTGGACAAACGATTCCTTTAATTCAAGCTGAACTCAATCAattaatttacaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367666 lncRNA upstream 83277 18631715 ~ 18631944 (+) True G310425
TU367662 lncRNA upstream 98220 18616690 ~ 18617001 (+) True G310421
TU367661 lncRNA upstream 99567 18613515 ~ 18615654 (+) True G310420
TU367657 lncRNA upstream 112641 18602378 ~ 18602580 (+) True G310416
XR_003403812.2 lncRNA upstream 113497 18596516 ~ 18601724 (+) True LOC113538055
TU367817 lncRNA downstream 158703 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA downstream 163272 18904829 ~ 18906623 (+) False G310547
XR_004580273.1 lncRNA downstream 172737 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA downstream 172737 18914294 ~ 18959567 (+) False LOC117599928
TU367933 lncRNA downstream 318778 19060335 ~ 19066486 (+) True G310649
XM_026932794.2 mRNA upstream 23208 18687442 ~ 18692013 (+) False snrpe
XM_026932914.2 mRNA upstream 44762 18654169 ~ 18670459 (+) True kif17
XM_026932916.2 mRNA upstream 44762 18654169 ~ 18670459 (+) False kif17
XM_026932915.2 mRNA upstream 44762 18654169 ~ 18670459 (+) False kif17
XM_034314341.1 mRNA upstream 61182 18647157 ~ 18654039 (+) False sh2d5
XM_026932834.2 mRNA downstream 49369 18790926 ~ 18803902 (+) True si:ch211-112f3.4
XM_034314408.1 mRNA downstream 231405 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA downstream 238440 18979997 ~ 19037668 (+) False cdk18
XM_026932563.2 mRNA downstream 301025 19042582 ~ 19058802 (+) False mfsd4aa
XM_026932561.2 mRNA downstream 301028 19042585 ~ 19059543 (+) True mfsd4aa
TU367680 other upstream 23207 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 23207 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1451558 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2213537 16489361 ~ 16501684 (+) False amigo3
TU367971 other downstream 345468 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 766698 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 1027433 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 1027433 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 2129095 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile