Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026932739.2 |
| length | 900 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 6 |
| gene id | LOC113537970 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 16910405 ~ 16912976 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005525 | GTP binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU366237 | lncRNA | upstream | 6148 | 16903857 ~ 16904257 (+) | True | G309187 |
| TU366175 | lncRNA | upstream | 27892 | 16797131 ~ 16882513 (+) | False | G309135 |
| TU366173 | lncRNA | upstream | 30668 | 16797131 ~ 16879737 (+) | False | G309135 |
| TU366176 | lncRNA | upstream | 30668 | 16797131 ~ 16879737 (+) | False | G309135 |
| TU366172 | lncRNA | upstream | 30668 | 16877585 ~ 16879737 (+) | False | G309135 |
| TU366244 | lncRNA | downstream | 5023 | 16917999 ~ 16919155 (+) | True | G309194 |
| TU366254 | lncRNA | downstream | 55420 | 16968396 ~ 16969437 (+) | True | G309201 |
| TU366262 | lncRNA | downstream | 102660 | 17015636 ~ 17016244 (+) | True | G309208 |
| TU366466 | lncRNA | downstream | 259286 | 17172262 ~ 17184538 (+) | True | G309389 |
| TU366592 | lncRNA | downstream | 331724 | 17244700 ~ 17248075 (+) | True | G309461 |
| XM_026932443.2 | mRNA | upstream | 13291 | 16893231 ~ 16897114 (+) | True | pde12 |
| XM_026932444.2 | mRNA | upstream | 19097 | 16882002 ~ 16891308 (+) | True | atp6ap1la |
| XM_026932620.2 | mRNA | upstream | 222862 | 16672820 ~ 16687543 (+) | True | ccdc66 |
| XM_026932622.2 | mRNA | upstream | 222862 | 16672820 ~ 16687543 (+) | False | ccdc66 |
| XM_026933001.2 | mRNA | upstream | 408721 | 16489361 ~ 16501684 (+) | False | amigo3 |
| XM_026932993.2 | mRNA | downstream | 31488 | 16944464 ~ 16998819 (+) | True | slmapa |
| XM_026932992.2 | mRNA | downstream | 31488 | 16944464 ~ 16998819 (+) | False | slmapa |
| XM_026932994.2 | mRNA | downstream | 31488 | 16944464 ~ 16998819 (+) | False | slmapa |
| XM_026932987.2 | mRNA | downstream | 31488 | 16944464 ~ 16998819 (+) | False | slmapa |
| XM_026932989.2 | mRNA | downstream | 31488 | 16944464 ~ 16998819 (+) | False | slmapa |
| XR_004580181.1 | other | upstream | 408721 | 16489361 ~ 16501684 (+) | False | amigo3 |
| XR_004580182.1 | other | upstream | 416266 | 16489361 ~ 16494139 (+) | False | amigo3 |
| TU364869 | other | upstream | 2389258 | 14514610 ~ 14521147 (+) | False | gpd1b |
| XR_004580240.1 | other | upstream | 2434020 | 14370788 ~ 14476385 (+) | False | asic1b |
| TU363207 | other | upstream | 4447869 | 12457601 ~ 12462536 (+) | True | G306480 |
| TU366607 | other | downstream | 348003 | 17260979 ~ 17263663 (+) | True | LOC113537865 |
| TU367680 | other | downstream | 1774421 | 18687397 ~ 18692014 (+) | True | snrpe |
| TU367679 | other | downstream | 1774477 | 18687453 ~ 18692014 (+) | False | snrpe |
| TU367971 | other | downstream | 2174049 | 19087025 ~ 19087806 (+) | True | G310681 |
| TU368136 | other | downstream | 2595279 | 19508255 ~ 19517159 (+) | False | phf13 |
