RNA id: XM_026932743.2


Basic Information

Item Value
RNA id XM_026932743.2
length 2921
RNA type mRNA
GC content 0.43
exon number 11
gene id hdac11
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11543739 ~ 11583449 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCATGACGAGACGCAGGCGCGCGCGGGGGGAAGCAGAGAAGCAGGAACAGCAAAGTGGAACCGAGGGATGGTCGTGACTAGCAGTGACAGCTTTGTTTGGAAACATTTGGGCATGTGAATACAGAATGAATAGATCTTTTAGAAGATGTCAGCGTATATCCTTTGCATAATAAACGACTAGACGACGAAAATAAGCTGACTCTAGAAATAAAGAGCAAATTAAATGGCTAGCAGCTGAAATCTGGGATGCTGTCGTCGACATGTCTAGTAAAGAAAGTTCAGAAGGAAAAAAGGGGTCCCACCGGACAGAGTTGTATGCACAGGTCCCAGCAACATGTCTGCCAATCGTTTACTCACCTGTGTATAACATCACCTTCATGGGTCTGGAGAAACTCCATCCATTTGACGCTGGTAAATGGGGCAAAGTCATCCACTTCTTAAAAGAGGAGCAGTTCATCACAGATGAGACCATTGTTGAAGCAAGGGAGGCCAGTGAGGAGGATCTCCTGGTGGTTCACACCAAACGCTATCTGAGCAGACTCAAGTGGTCTCTGGTGGTTGCCACCATCACAGAAATCCCTCCTCTCGTTTTTCTGCCCAACTTCTTGGTGCAACGCAAGGTGCTGAGACCGTTACGCACCCAGACTGGCGGCACTATTATGgCTGGAAAGCTCGCCATGGACAGAGGATGGGCAATTAACGTGGgAGGAGGCTTTCACCACTGTTCCAGCGACAAGGGAGGGGGTTTCTGTGCGTACGCCGACATCACACTTGCTATTAAGTTTCTGTTCGAGCGAGTGGAGGGCGTCTCCAGGGCCACCATCATCGATCTGGATGCTCATCAGGGAAATGGACATGAGAGGGATTTCTTGGATGACAGACGGGTTTACATAATGGACGTCTACAATCGGCACATCTACCCTGGGGACGGATACGCCAAGAGGGCCATTAAGAGGAAAGTGGAGCTGGACTGGGGCACAGAAGACACCGAGTATCTCCAGAAGGTGGAGCTCCACTGTGAGGGCACATTGAATGAGATCAGACCTGACGTAATTGTGTACAATGCGGGTACTGATATCCTGGATGGTGATCCTCTTGGAGGCCTGGCCATTTCCCCTCAGGGCATCGTGAAGAGAGATGAGATCGTGTTTAGGGCTGCACGGAGGAGAGGGATCCCCATTCTCATGGTGACGTCAGGCGGCTACCAGAAGAAGACAGCACGTATCATTGCTGACTCAATCCTGAACCTGCACAGACAGCATCTGATTGGTGGAGAGGTGTCGGAAGAGGCGGGGCAGTCGATGGTGCCAGTCATGATGAGCAAGTCTGTGTCAGCAGGGGCAACTTTCAATGCCATCTGACGTTTACATCTAGCTCTTACTGGCCTGTTTGTTTAAAGTTAGAAGCACTGTCctcattttttgtttattaacagaaacatttaatCCTGATAAGGTGTGGGGTGATCCAAGGAACTTTATTCTTCAGTTTTAGTGAGGGaaagtttatatatttttaactgcTTCAGCCTATACAACTTTAACCCATGGTACTTTAACAATGAATTAAACCTTCTAGATGAGATTTTAATTCTTTACATTGGTACTTTATGCAATGCTTATTTGCacaatttgaattttattttaaatgatgatAACAAAAGCTACAGCCATTCCAAGCGAGGAAGCAGTTTCTAAATTTACTGTACTATACAAATTTCTTCTACATTACCAAAAGTCATTTGGTACGAAGTACTCCTGTTTATTATAAGAGTCTAACCATAATCTTTACGTGCATTGCCCAtcgttttattactcttattacATTTCTATACTGTTCTAAATGTATAAAGCCATAAATAATGCCAATACTCCATGCCCCAGGTCTAGCACAATCCAACAGCCGTATCCTTAGAGTTAGTCTGCAAGTTTATTGGCTTGGCTTTGTGCGACTGACCAACTGAATGTGTTCTTCTGAAGAGGATTGCTTGCCTCTTACCCAGTTTGCCTTTTTCAGCAGACTTCATTTAACAGTGTTTTTCATGAACCATAACCCTCTCCGTGCCCCCGGCAAGTCCTTGcaagttcttcttcttcatgctGACTCAGCATCTACTTTTAGATATCCAGCATTGAggtaatataaattataaatatgtgcAGTCCTCTTAGGTGATGCTCAATCCACCTCAAAAAAAGCGTAGCTGCTCAAGGCCTCTCCTGACCAGAGGTATCCTCTTACTACCATTTAGCGATTTATTTTATCAAAACACTCAATGTTGACAAGCTAAGAACAAAATAATTAAGTGGAGTTAGCAAGAAATGGCCTTTGAAAACAAGGTCGTCTTGTAAAGTTTAGCTGCCATCTGCTGGGTTTCGTGCTTGGCTGCTGGAGTGAGATTGGGAATAGCTACTAATAAGTGTGATGATAGTGTATGAGAGTAAGATGAAAGATTGAAATACTTTAGCTTGCAGATAGATTGCCAAGGCTAATTTTATAGCTCCTTGAGGAAGATTGAGTATAGGTGCATGCAATTTCAAGATTCAGTACTCTAAATGCAACTTTTTAGCAGGTATTTGGTCAATAAAAGTGTCGTTACCACTACTTAATAACGCACATTAACATGATCATTCTCTTTGCTTTGTATTGATTTTGGTGATGTGTACCTTATTGACATGAATATACTTTAAACTGATTCCTGCACTTATACCCCTCTCAGGGGAGCTtattctgatctttctggaggtctattcaggtgtgtgtaagtgtttaaataCTCATGTACCCacttactgtactgtatgtccaTGCACTACATGTTGTGGCGCCTAAAAAAAAGAGCCATGATATAATatgcattcttatttttttttttggtatctggcattcagatttaaatcacttgtgtgtgagaatggg

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11418 HDAC11; histone deacetylase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362777 lncRNA upstream 601 11542933 ~ 11543138 (+) True G306106
TU362588 lncRNA upstream 113694 11429819 ~ 11430045 (+) True G305920
TU362571 lncRNA upstream 133443 11409531 ~ 11410296 (+) True G305903
XR_004580205.1 lncRNA upstream 188662 11352876 ~ 11355077 (+) True LOC117599893
TU362532 lncRNA upstream 226239 11317187 ~ 11317500 (+) True G305864
TU362821 lncRNA downstream 64851 11648300 ~ 11661421 (+) True G306145
TU362882 lncRNA downstream 168776 11752225 ~ 11754031 (+) True G306199
XR_004580179.1 lncRNA downstream 253889 11837338 ~ 11843605 (+) True LOC113537887
TU362969 lncRNA downstream 339020 11922469 ~ 11922676 (+) True G306284
TU362971 lncRNA downstream 341412 11924861 ~ 11925433 (+) True G306286
XM_034314291.1 mRNA upstream 270260 11256014 ~ 11273479 (+) False cfap92
XM_026932759.2 mRNA upstream 270260 11256969 ~ 11273479 (+) True cfap92
XM_034314292.1 mRNA upstream 270260 11256969 ~ 11273479 (+) False cfap92
XM_026932760.2 mRNA upstream 270260 11256969 ~ 11273479 (+) False cfap92
XM_026932761.2 mRNA upstream 270260 11259246 ~ 11273479 (+) False cfap92
XM_034314328.1 mRNA downstream 25473 11608922 ~ 11671459 (+) False fbln2
XM_034314327.1 mRNA downstream 25474 11608923 ~ 11671459 (+) True fbln2
XM_034314329.1 mRNA downstream 25475 11608924 ~ 11671459 (+) False fbln2
XM_034314330.1 mRNA downstream 25475 11608924 ~ 11671459 (+) False fbln2
XM_026932863.2 mRNA downstream 210562 11794011 ~ 11797434 (+) True barx1
TU362774 other upstream 27926 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 62639 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 217379 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 228303 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 322224 11215015 ~ 11221515 (+) False dynlrb1
TU363207 other downstream 874152 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 2787339 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 2931161 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 4905912 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 4905912 16489361 ~ 16494139 (+) False amigo3

Expression Profile