RNA id: XM_034314291.1


Basic Information

Item Value
RNA id XM_034314291.1
length 4008
RNA type mRNA
GC content 0.46
exon number 19
gene id cfap92
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11256014 ~ 11273479 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTCAGCCCCAGGACTTCACACAGGATCTGGAAATCCTCGGCGGGGATCTTACCGTCGCCCTGGCAGTCCAGGTGGTGAAAAATCTCCTGCAGAAAAAACATTCTGGGACAAGATGGAACCTGATGCCTCCAGCACCTCACTGGACCTGATGAGAAGCAATAGTGATGATGACTGCCAGTCTTCTGACGAACGAAAAAAACACGATGGGAATAATGTTGATGACAATGCTGTCCACAACTCTGAAAGCAAAGAGACAGAACCTGAGCCAGCTGGGCCATGCCCAGATATTATCCATACCCACTCACAGTGCAACGCTGACTCCAGTTACACAGTCACCTGCACGGTCAGCATGGTGCTGGCTGTGCCAAGAGGTTATGAAGATGATCCAGTTATGactacagagaaagagaggaaactCAAGAAAGTCCAGCCTAAATGTATTATAGAGGCACCCAAAGCACAGGCCTATTACCACATAGAATACAATCTCCTGCCTGATGATAGTGAGCCAATCAAAGTAGACTTGGTGATGTTTGGTTTGGTGGCAAAGGTGTATATGGATAATGAGACAAAGGTGCTGAAGGCATGGCAGGAGGGTGATCACCTTTGGCTGGGGTGGTCTCAGGCCGTGAAGCTCAGTGTGACCAGAGAGCTGCTTATAAAGATGTCATCACATAAAATAACCTTCAGGCTGTGGGACACCAAGGACAAAGTGTCTCCTAAAGCAAAATATGACAGACCCAAAGCCTTCAGATTGCCACAGGGAAGGAGAGTGGAGGATCCAGACCAAAGAGGTGCTAACCTGGACTGTGAACCGGAAAGTGCAGGTGGCATAAAGGGTATGGTGTATAAGTTGCGAGCTCTTTATGAGAAACAGAACCCAATAACTACAACTTCCAAGAAGTGCCAAAAAGACATCATATCAATGGAGTACAAACGACCTTCAAAGCTCACGTGTGACACAGATGATCCCAAACTGCCCACTATGGAGGCAAATGGAGTCAGTGAGAAACCTCTGTCATCTGTAGTTCTGAAAACTGATGGATCGCTAGCACAAGAAGCAGCATTTTCCAACCAAAGTTATCCTAATGGAGGAAAGCAGAATACTGAAACTACTGATCCAAAAAGCATCAAGTCTGAAGCCACTGCGGATCAAGAAAAGGACATGGCATTGTCAAAGTTATCACAGAGACAGTCATTAGATCACTGTATGAAAGGCCCCAAGGACACAACAATCTCTTCTACAAAGAGTGGCACACTGAAGGACAGCAGTTTGGTGGCATCCAAGAAGAAACATGTTCAGAAAACTGTTCAGGAGAGAACAGAAGAAGAGGACATACGCAAAAATGGAGTCGCCTCAGCTGAGCTCAAGGCCATGTATTTTCTTGCAGGAGAGACGTCGCTGATAGACTGTTTGATGATCCGCTGTAGGAGAGTGTCCAAGGTCTTGTGCAGCATCACTCTGGATCAGCCGCTTATATCTGACGAACTCAAGGCTGAGCTCAACCCATTGATCATCACAATCTTGTCAGCATCTTCTCTGCCATCTACTCCTGTTCCCTTCTATGAACTTGAGCAAAAATGCATGCCTGTTTACTGCCAGTACAAGTTCCACAACATGCCTGCCCACAGGACCAAAGGGCTGAGTCATGGATCTAACATATATTTCAAAGATGTGAATGTGATCTTCACTGGCCTCCTCAGCACTGAAGAGCTGCTTGAGTTCCTTAGGGGTCCACCGTTAGAGATTGAGGTTCATGACCGTGATAGGAAACCTGAAGAACTTTCTTCTAGTCCAGCAATTTTTGGCACAGAGGCCACTGATGATAAATTAGCCAGCACAGCTCTAGTCCCTGCCAAACAGACAATCTACAGCCCATTTAGGGAAATGAGGAAACTCTGTGACCCTTATGGTATTGCCAAGCTAAACTTTTCTGATCTCCTCAGAGGACACAGGTGTCTGAAACTCAGCCTACCTATAAGAGGTTCCCATCCAGTACAATGGCTGGGCACTGACAAGAATGAATGTGGGGAAAATGAGGCTGAGACAGCAGGTGCTCTGGATGCCCAGGACAATGCTATGACAAATGGTCATTATCTTAGTGCGAACTCCGAGCTCAAGGTGCAGGTTGAATTAGCACACCCACTCAGTCCTGACCCTGATAAAAGTGAAGGGCTTTGCCCATTTGGCCgtatcatttacattttcaaacacaacaaTATTGCTTTTCTGGAAAAACTGAGGTCTGAAATTTTAAGAATCAACGCAGTGGCATTTCAAGTACACTGCTATAATAAGGAAACAGCTGAAAGAATCTTACAGGGTCATATAATGGATgccacagaaagagaaaaaaaatatttgaacgCTTTAACAGGGTTTCATTTCCTGGATAATGCTCTACACCTTTTTGTCCTGGAAGGACTGAAGGATGAAGCCATCAAAAAGCTCTGGGAAACAGTACCTATAAAgtGGGTTGAGGATGTAGAGAAGCATGTCACAGTTCTTTATAACTCAGGTCTGAGCTTCTCAAAGAGGCTCTATGACACTCTGGATGTTGGGTTGAGTCCAATTCATCTCCACAAACCACTAGAGACCATCATGAGACAACCCCTGGTGTATACCAGAGACGCAGTCCCCTACACCTGCCTACAAGCCATGCTACGAATAAATCACCTCTGCCAAGTGAGGAAACTTGAAGCAGTGGTCCAAAACAACCTGTTCCCATCAGCTGAAATGGTTCATAGCTTGAGGAATGAGTTTGGAATTATTCCTAGCAGAGGAGTGGAGATATTAATGCCAGACAGCAGCGAGGCAAAGGCTATTTTGCATCCTCATGTGTCACAGAGGAGGAAACACATACCCATTGACAACTTCAATAAAGATTATCTGGCATGGAAACAGAGTCGAGCAAATCTAGGGCTTTACACAAAAAACTTTATACAGGTCAACATTGAGGACATCCAAACAGCAACAAGTGTTTTACAGACGCTAAAGCCAAAAGTGTTTGTAGGCAAAGTGGATGATGGTCAGTCTGCCCACAACTACAGTATTCAGACAATGAACAGCACCAGTCTGGCTAAAGAGCTACTGCGTAAGGAGATGGCAAAGGAGCCAGCTCGCAGGTTCACCTATAGTCAGCATTACCACTCCTTCACAGTGGACCCTGTGGATATAGAGGCTGAGCGTAAGGCCTCGGAGGCCAGGTCTCGAGCTGCATGGCGTACCTGCAATGGCTTCATCTATTATAATTTCAAGGACAGCATGGAGTCCAACCAACACCCCAAACACCCAGACGAGACTCGGGTGGAGGAGCTTAGAAAGCCCTGGAAAGAGAACATTCTTCATGAGAACATACTTAAGCCAGTCCTGAACAGGAACACATGGCCTTGGAGCAAACGGCACGAGGACTTTGAGCTTTACAGGAAACCACCTGCTGTTTTAAGTCCAGTACCCCCAATTACTATTCACCTCGCAGGAGAAGCTCTGCATCAGGAACAGCTTCAAACTGCACGTGCTCAGTATGTTAGATGGCTGAGGAAGATCTTGCCTGATAAGGAGTCTGCAAGCTGCAGTCGAGTCCCAGAGTTCAAGTGCCATATGCGAAAAGCAGGCCTGGATAAACTACATGATATCCTGAAGGACAAGCCTATGAAGCTATCTCTGAGAGCATGGAAGGGATCGATGCCCATGCCATATACTGACacaaagaaggaagaaaaactgGAGCACATCCGTTCGTCTGACACACAGATGAATGCAAGGCGTGCTAGTGAACACAGCAAGTTCTCAATTTGGACGTTACTGGAGGTCACACTCCTTTCAACACAAGCAAACTGCCCTGCCTCTtacagatgaagaaaaaagtttGCACGTCTTTCAAAAACCTCAGAATACCACCAAGATATACACAGATTTGGCTAACACCCAGCACAAGCGAAATGTCATAGAAATGAGGACCTGCAACAGTGTCACTattcacataaaataaaaagcttcaGGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362384 lncRNA upstream 121290 11134515 ~ 11134724 (+) True G305735
TU362383 lncRNA upstream 126527 11129288 ~ 11129487 (+) True G305734
XR_003403810.2 lncRNA upstream 180424 11073762 ~ 11075590 (+) True LOC113538022
TU362514 lncRNA downstream 106 11273585 ~ 11275616 (+) True G305849
TU362498 lncRNA downstream 24843 11298322 ~ 11300713 (+) True G305833
TU362499 lncRNA downstream 29811 11303290 ~ 11304633 (+) True G305834
TU362533 lncRNA downstream 37391 11310870 ~ 11312417 (+) True G305865
TU362532 lncRNA downstream 43708 11317187 ~ 11317500 (+) True G305864
XM_026932751.2 mRNA upstream 20753 11224148 ~ 11235261 (+) True map1lc3a
XM_034314494.1 mRNA upstream 34474 11214752 ~ 11221540 (+) True dynlrb1
XM_026932973.2 mRNA upstream 34474 11214994 ~ 11221540 (+) False dynlrb1
XM_026932893.2 mRNA upstream 77888 11141236 ~ 11178126 (+) True unm_sa1614
XM_026932895.2 mRNA upstream 77888 11141236 ~ 11178126 (+) False unm_sa1614
XM_026932743.2 mRNA downstream 270260 11543739 ~ 11583449 (+) True hdac11
XM_034314370.1 mRNA downstream 270260 11543739 ~ 11583449 (+) False hdac11
XM_034314328.1 mRNA downstream 335443 11608922 ~ 11671459 (+) False fbln2
XM_034314327.1 mRNA downstream 335444 11608923 ~ 11671459 (+) True fbln2
XM_034314329.1 mRNA downstream 335445 11608924 ~ 11671459 (+) False fbln2
TU362496 other upstream 34499 11215015 ~ 11221515 (+) False dynlrb1
TU362445 other upstream 77541 11168459 ~ 11178473 (+) False unm_sa1614
TU362376 other upstream 143496 11111739 ~ 11112518 (+) True G305727
XR_003403954.2 other upstream 482572 10768707 ~ 10773442 (+) False LOC113539694
TU362531 other downstream 40705 11314184 ~ 11315436 (+) True G305863
TU362537 other downstream 52125 11325604 ~ 11326360 (+) True G305869
TU362623 other downstream 207190 11480669 ~ 11481100 (+) True G305955
TU362774 other downstream 241580 11515059 ~ 11515813 (+) True G306103
TU363207 other downstream 1184122 12457601 ~ 12462536 (+) True G306480

Expression Profile