RNA id: XM_026932778.2


Basic Information

Item Value
RNA id XM_026932778.2
length 4604
RNA type mRNA
GC content 0.43
exon number 15
gene id slc6a1b
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13059983 ~ 13073758 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGATGCTCCAGTGTGATGTCAGCGCTGGAGATGTTGGACTTGGCGAGATTTCACCCTCACTTTTTCATTGGAGCTCAGCAGATGAAGGTGGagtatcatcatcaccatcatcttcctcttctctcctgcCTGATGCTTTAGTTGGTGTTGCTGCTGCTTCAGGATCCATCTCTGTCTGGGCTTTTTCTCATTTTGGACATCAGGATAAACATTTTTTCATCTCTTTGCTTTATGGAAACCCTTGGTTTTGCTTACCTTCAGGAGGAATAAGCAGACGGAAAAGGTCTTGCAGGACAATCCGGTTAAATATTTCCGCCGCCCGAGTCGAGTTTGTTTTTGGGGGCACGGAGCCGCGAAGCTGCTGTCCGCGTGGAGCGGTGCCGAAGTCTCGCGTCCGGGCGCCAGGAGCTCCGCCAAGCCGCGCGACATGGCCACGAACGGCGCCAAAGCCTCAGACGGACACGTCCTAACAGAGGTCAACGCGGCGCCCGCGGCCAACGACAAGCCCAAGACTCTGGTAGTCAAAGTGCAGAAGAAAGAGCTTCCGGACCGAGAAACGTGGGCCGGCAAGTTCGACTTTCTGCTCTCGTGCGTCGGTTACGCCATCGGGCTCGGAAATGTCTGGAGGTTCCCTTATCTGTGCGGCAAAAACGGCGGAGgGGCCTTCTTGATTCCATATTTTCTGACACTCATATTCGCTGGCGTACCGTTGTTCTTTCTTGAGTGTGCTCTCGGTCAGTACACCTCCATCGGTGGCCTTGGAGTGTGGAAACTGGCTCCTATGTTCAAAGGTGTCGGCCTGGCGGCAGCAGTTCTGTCCTTCTGGCTTAACATCTACTATATTGTCATCATCGCCTGGGCCATTTATTATCTATACAATTCCTTCACCACAGAGCTCCCATGGAAATCCTGCAACAACCCCTGGAATACAGAGCAATGCTTTTCCAACTACAGCTTGGCAAACACGTCTAACATGACCAGCGCCGTCGTGGAGTTTTGGGAACGGAATGTGCATCAGCTTACGGATGGTCTGGAAAAACCAGGGGAGATCAGAGTGCCACTGGCAATAACACTGGCCATCGCATGGGTCCTGGTCTACTTTTGCATCTGGAAAGGTGTGGGCTGGACAGGAAAGGTGGTCTATTTTTCAGCCACATATCCGTACTTCATGCTGCTTATCCTGTTCTTCCGTGGAGTTACGCTGCCTGGAGCTAAAGAGGGCATTTTGTTCTATGTCACACCTAACTTTGAAAAGCTGAAGGAGTCAGAAGTGTGGCTTGATGCTGCCACTCAGATTTTCTTCTCCTATGGACTCGGCCTCGGGTCTCTGATTGCGCTCGGGAGCTACAACCCCTTCAACAACAACGTTTACAAGGACTCCATCATTGTATGCTGCATCAACTCCTTCACCAGCATGTTTGCtggatttgtcattttttccattGTGGGCTTCATGGCTCACATCACAAAGAGGTCTATTGCAGATGTAGCTGCATCAGGTCCAGGCTTGGCATTTTTAGCTTACCCAGAGGCTGTTACTCAGCTGCCCATTTCACCACTTTGGGCAATTTTGTTCTTTTCCATGCTGCTTATGCTTGGAATTGACAGTCAGTTCTGTACAGTAGAGGGTTTCATCACTGCCTTGGTGGACGAGTTTCCCCGCTTATTGCGAGGACGACGAGAAATCTTCATTGCTGTTGTCTGCCTTGTGTCTTATATCATCGGGCTGTCAAACATCACGCAGggtGGCCTCTATGTGTTCAAGCTTTTCGATTACTACTCTGCCAGTGGAATGTGTCTGCTCTTCCTGGTGTTCTTTGAATGCATCTCCATATCCTGGTTCTATGGTGTCAATAAGTTCTATGGAAATATTGAAGAGATGATTGGATACAAACCTTGCATTTGGTGGAAATTGTGTTGGGTGGTGTTTACACCTTTGATTGTGGCTGGTGTGTTCCTGTTCAGTGCGATCCAGATGGTTCCCCTGACCATGAATAATTATGTGTTCCCAAAGTGGGGACAGGGTGTAGGCTGGTGTATGGCCTTGTCTTCTATGGTCCTCATTCCTGGTTACATGGGCTACATGTTCCTAACGTTGAAAGGCTCCTACAAAGAGCGTCTCCGGATAATGATTCAGCCTACGGTTCTGGTCAGAAGCCAAGAGAATGGGCCCGAGCAGCAACCTGAGAGTGTGAATGCAGCCAACGATGAGGCATACATCTAAAACCCTGGACATTGCAGGCCCTTCGgaacaaaaatgaaaccaagtaaTCAAGGTTGAACGCTAGCAGGGACTTCTATGTCTAAATTATAATCACCTACCTCCAGGGGAAAAATGTATCCAACCTGATTACAACTGTTTGAAaattttaatgtgtgtatgaaaaaaaaaaacaacgatcCAGCGATGATCTAGTGCTAGTTCGTATTGCATATGCAAGATATTAGTCTTTCCAAAACGTAACATTGTAACAATTACTGTTTGGATCCCAATGTGATTGAACACTACTGTGCTAATTCGATATATATTTACCTTATGTAATTATGTTAAGATATTGTATAAAGATCTTAGAATAGAATCAAATTGTATTTGATTGTATTTGAagacatataaaaaaatgaatgaagttaGTTGgcaaaatatgacaaatatgatGAACTGCATCATGGCCAGTTTCGAGCAGTGGCCATTATGGGAGCATATAGCTGGTCCTCATGGCCTGTGTAAAAGGTTATATAAAGAGACTCCTACTGTTTTTATTATCCCAAACACGTACTCAAGCTGGATTAGTTTTACCTGGCTTGGTAATGTAAATTAAAGGTGCGGTCAGCGATTTTTACACCAGAACACTTGTCATATTTGGTAAAGTTCTTGTCAAATTCCAGCAGCTGTCATGTTCTGTAAATGGGAGAAACAAATTAACGTCGATATTCAACCAATCAGGATAAGAGGTGGTTCTACATTCGTATCAGTCATGCTGTCCTTCAATTAAGACAGCTCCCCCACTTTCATGTGCATTCAGGCACTCTAGCATGTGTTATGGGTGCATGGCTTTGGAGTTAAATCTGAAATAACTCTTTGGATTTCGATTTACAAAACAGCTAGCTCTAGCCAACTTCCACCAAAATCGCTGACTATACTTTTAGATTGCCAACAAGATCCATGATTCAGGCTAAATCCATTTTTCCTCGTATGACAATTCCAGAGCAAATAAGCTTCAGTGTTTCAGCAAACATGGTGATCTCTCTGTGAAAGTAGTCCTTTCTGAACTAACAGTAATGTAATAAGAAAACCTGATAATAGTCAGTAACACGTCTTTTAACTGAAAATACAAAACGTCCAATGTTACGTAATACTGATGTTTACATATGTGACAAATTATCTACATTATCTAGATTCTTGTACAGATCCAGTCAGATTGCTCAAAAAATACATGACAGGTAAAACATATCCAGCTATAACAGGGCGTAAGGGTTTACAACACCCCTGTAACCCTTCAGTCCCAAAATAAGCACAAACCAGTATAGATTTGAGTTTACAGACGTCACAAACAGCGATGAATTATCTGTCACACAAACAGAGTCATCTTACACATAAGAGAGActgttagttttttattttttaagaactAAATAACTTTGTATGTTTTTTCAATCGtttttagtctgtttttttatgtaagCGTGAGAAGGACCAAAATCGCGTTCACATGGAAATCATTTGCATATGAAAGTGTTTCGCGTCACACTGTGTCCTAGAAAGTGCAGGGTACAAAAACGACACAAAATGCATAATGTTTGGCAGTAATAGCCTCTGATTCCACTGTTCAGTCCTGCTTATTTGCATGCCACTCCTCAGGAACAATGGTGGAAGTGACCAAATTTGACTCTTTCCCCCCCCTCACCCGAATCAAATGGATTAGAGCTGTGAATGGCCTTCAGCAAATAATCAGACTGTGAGCAGAAGCCATAGTGTGTCTCCAGAGTTTGTGAGGCCATTTTGGGGAAAGGCACCTTTAAAGaaaccagcaaaaaaaatcacaggctAGTTGTAGTcagttaaaattatttaaatatctatATTGTCTGCATATTTGGTCTTCTTTAGAGAACTGCCTTGGCAATAATTAACTAGATAAAGTGTATGTGAATGCTGTTATGTATATGACTGGTTTAACCCCTGTTATTATAACTACACCGGTTAAAAGCACGAAGCTTTAAAACCACAAGCTCCAGCGGTTGTTTTTCAAAAAGGGACAGAGTTAGTTTGCTTCTATGGCAGCTACATGTGACAGGGACGTGGATAAACGACTCAGCAAAGATATCGAACTAAAATCGTGCAATCTGTTAGCGTTGCGTACGTTTTGTACAAAGTTCTCATTCAGCAGATTTCTCTCTGTAAACctgtactgtgtaaaagtatCTGTGAATGTCCATATGACCACTGAGGTTTTGTCTAAATGTTAAAGACTcttattatttactgttttcTGCAATAATACTCTCAGAAACTAAAGCACATAGTatttctgaaatgtaaaaaaaaagaatatcaaTAACAAAAGCAGAAGAATATAATAAACTATAGATATGTCTAGTCAGA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG:

id description
K05034 SLC6A1, GAT1; solute carrier family 6 (neurotransmitter transporter, GABA) member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363525 lncRNA upstream 155142 12904208 ~ 12904841 (+) True G306756
TU363513 lncRNA upstream 262001 12797748 ~ 12797982 (+) True G306744
TU363232 lncRNA upstream 486224 12572422 ~ 12573759 (+) True G306503
TU363205 lncRNA upstream 611609 12437199 ~ 12448374 (+) True G306479
TU363193 lncRNA upstream 764254 12295369 ~ 12295729 (+) True G306470
TU363733 lncRNA downstream 122717 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 215031 13288789 ~ 13293439 (+) True G306937
TU363757 lncRNA downstream 257929 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA downstream 259048 13332806 ~ 13333248 (+) True G306961
TU363884 lncRNA downstream 276695 13350453 ~ 13350680 (+) True G307079
XM_026932776.2 mRNA upstream 48924 12975527 ~ 13011059 (+) True slc6a11b
XM_034314114.1 mRNA upstream 100877 12789493 ~ 12959106 (+) False atp2b2
XM_026932905.2 mRNA downstream 66812 13140570 ~ 13161692 (+) False hrh1
XM_034314385.1 mRNA downstream 66963 13140721 ~ 13161692 (+) False hrh1
XM_034314384.1 mRNA downstream 73493 13147251 ~ 13161692 (+) True hrh1
XM_034314075.1 mRNA downstream 93397 13167155 ~ 13279101 (+) True atg7
XM_026932625.2 mRNA downstream 285166 13358924 ~ 13425482 (+) True syn2b
TU363207 other upstream 597447 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1544170 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1578883 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1733623 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1744547 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1297030 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1440852 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3415603 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3415603 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 4187221 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile