RNA id: XM_034314479.1


Basic Information

Item Value
RNA id XM_034314479.1
length 1546
RNA type mRNA
GC content 0.47
exon number 13
gene id slc6a1b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13059983 ~ 13073758 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATTTTTTCATCTCTTTGCTTTATGGAAACCCTTGGTTTTGCTTACCTTCAGGAGGAATAAGCAGACGGAAAAGGTCTTGCAGGACAATCCGGTTAAATGTGTCGGCCTGGCGGCAGCAGTTCTGTCCTTCTGGCTTAACATCTACTATATTGTCATCATCGCCTGGGCCATTTATTATCTATACAATTCCTTCACCACAGAGCTCCCATGGAAATCCTGCAACAACCCCTGGAATACAGAGCAATGCTTTTCCAACTACAGCTTGGCAAACACGTCTAACATGACCAGCGCCGTCGTGGAGTTTTGGGAACGGAATGTGCATCAGCTTACGGATGGTCTGGAAAAACCAGGGGAGATCAGAGTGCCACTGGCAATAACACTGGCCATCGCATGGGTCCTGGTCTACTTTTGCATCTGGAAAGGTGTGGGCTGGACAGGAAAGGTGGTCTATTTTTCAGCCACATATCCGTACTTCATGCTGCTTATCCTGTTCTTCCGTGGAGTTACGCTGCCTGGAGCTAAAGAGGGCATTTTGTTCTATGTCACACCTAACTTTGAAAAGCTGAAGGAGTCAGAAGTGTGGCTTGATGCTGCCACTCAGATTTTCTTCTCCTATGGACTCGGCCTCGGGTCTCTGATTGCGCTCGGGAGCTACAACCCCTTCAACAACAACGTTTACAAGGACTCCATCATTGTATGCTGCATCAACTCCTTCACCAGCATGTTTGCtggatttgtcattttttccattGTGGGCTTCATGGCTCACATCACAAAGAGGTCTATTGCAGATGTAGCTGCATCAGGTCCAGGCTTGGCATTTTTAGCTTACCCAGAGGCTGTTACTCAGCTGCCCATTTCACCACTTTGGGCAATTTTGTTCTTTTCCATGCTGCTTATGCTTGGAATTGACAGTCAGTTCTGTACAGTAGAGGGTTTCATCACTGCCTTGGTGGACGAGTTTCCCCGCTTATTGCGAGGACGACGAGAAATCTTCATTGCTGTTGTCTGCCTTGTGTCTTATATCATCGGGCTGTCAAACATCACGCAGggtGGCCTCTATGTGTTCAAGCTTTTCGATTACTACTCTGCCAGTGGAATGTGTCTGCTCTTCCTGGTGTTCTTTGAATGCATCTCCATATCCTGGTTCTATGGTGTCAATAAGTTCTATGGAAATATTGAAGAGATGATTGGATACAAACCTTGCATTTGGTGGAAATTGTGTTGGGTGGTGTTTACACCTTTGATTGTGGCTGGTGTGTTCCTGTTCAGTGCGATCCAGATGGTTCCCCTGACCATGAATAATTATGTGTTCCCAAAGTGGGGACAGGGTGTAGGCTGGTGTATGGCCTTGTCTTCTATGGTCCTCATTCCTGGTTACATGGGCTACATGTTCCTAACGTTGAAAGGCTCCTACAAAGAGCGTCTCCGGATAATGATTCAGCCTACGGTTCTGGTCAGAAGCCAAGAGAATGGGCCCGAGCAGCAACCTGAGAGTGTGAATGCAGCCAACGATGAGGCATACATCTAAAACCCTGGACATT

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363525 lncRNA upstream 155351 12904208 ~ 12904841 (+) True G306756
TU363513 lncRNA upstream 262210 12797748 ~ 12797982 (+) True G306744
TU363232 lncRNA upstream 486433 12572422 ~ 12573759 (+) True G306503
TU363205 lncRNA upstream 611818 12437199 ~ 12448374 (+) True G306479
TU363193 lncRNA upstream 764463 12295369 ~ 12295729 (+) True G306470
TU363733 lncRNA downstream 125083 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 217397 13288789 ~ 13293439 (+) True G306937
TU363757 lncRNA downstream 260295 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA downstream 261414 13332806 ~ 13333248 (+) True G306961
TU363884 lncRNA downstream 279061 13350453 ~ 13350680 (+) True G307079
XM_026932776.2 mRNA upstream 49133 12975527 ~ 13011059 (+) True slc6a11b
XM_026932433.2 mRNA upstream 101086 12789493 ~ 12959106 (+) False atp2b2
XM_026932905.2 mRNA downstream 69178 13140570 ~ 13161692 (+) False hrh1
XM_034314385.1 mRNA downstream 69329 13140721 ~ 13161692 (+) False hrh1
XM_034314384.1 mRNA downstream 75859 13147251 ~ 13161692 (+) True hrh1
XM_034314075.1 mRNA downstream 95763 13167155 ~ 13279101 (+) True atg7
XM_026932625.2 mRNA downstream 287532 13358924 ~ 13425482 (+) True syn2b
TU363207 other upstream 597656 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1544379 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1579092 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1733832 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1744756 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1299396 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1443218 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3417969 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3417969 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 4189587 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile