RNA id: XM_026932780.2


Basic Information

Item Value
RNA id XM_026932780.2
length 1992
RNA type mRNA
GC content 0.40
exon number 5
gene id pdrg1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18560022 ~ 18564811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTCGTTGTTTCCCTGTACAAGGCGGAATTATTTTGCAGGGTGCAAGCTCTTCCTGCAGGAGCACGATGGATTCTCAGAGAGTGATGGATTATCTGATGGAAGTAGAAGTCGCTGCTGAGGATGTGCTCGCTGACAGACAGCAGATTGTGGACCTGGACGCGAGAAGAAACAGAAACCGAGAAGCTCTGAGTGCTCTGAGGAACTGCGCTTCTGATGACGACAAAGTCAAGGTTTGCTTTGGGAACATGTTCATTAAATTCCCCAAGGAGAGCACCAAATCCATGATTCAGAAAGATCAGGAGCAGCTGGAGCAGGAGATAAACGACCTCCGGAAAGGTCtcaaagcaaaagtaaaccgGCTCAATGATTTACAGGggAAGCCTGAACTGAGGGGATATAACCTGTCTCCGCTGAGCGGCGATGAACTCAAGGCTATTAATAGCATCCTGAAGAGATAATATCAGCTTCAATTTAACGTTAAAACGTGAGGAAGACGAGGGACGTGGGGTAGTTAAGATCGTATGAacatgatgacgatgatgaagatgatgatgtgtgaaaatgccttacacactgcagtgatGCACTGGAGAATATGCAAACTAGCATTCCACAGCGTTGCTAATCCTGCTGTTTCACACACCCTATCTGTAAGATCTGTTTTGTACTGTTTAGACTTGAGTGCAGAAGTTTGCACGCCCTTGCTGGGAAATGATGACCTCAACGAGACACTGACATTTATAGACATTCtttcattgtttaaaataaagaaaaaaaaaagggggaaatatCTTCTATGGTGTTTCTGACTGAGATGAAATGTgttctgctgtttgttttggatgTTCTTGCAAATTCCTTCGGTATATTTTTCTCCCCCCAGTTATTTTTCTTCCAGTCTTTGGCCGTGTCTTGCTGTGCGTGTTTCTGAGCGCGTTCTCCAGCTCTATGAAAGGTCAAACTGCTTGAGTTTTAGGACTTGTACTGTATGAGggatgctccacataacctaagactaataataaacacgtGTGCTCGTTGATATGgcgaattttatttattttttttaatgtgagtaGACGGTATATGTAtaaaaggagtctccagtgtcagcgctttgtaacgtTTTTCCTCCATGTTAAAGTCTTCAAGCCAGATGACTttgtagtttctcagtaacatggaaAGCTGCGTTTTTTCGccctcttattaacttcaagacagaaaaaaaagagaggttgttGAAGGAATTGCTTTTTATAATTGctataatgtatgtaataacAACAATTAAGTTGTCTcctggacgttccacaacattatatgtaacaaAGTGCTAAAAAgttcgttaaaaaaaaaccaataaatTGTAATCCCTGAAAAATTGCTGTGattttaagaggaataaaacacttcaggatttgcagttataggaaaataatcaacttcgaggtggtaatagtaactccacatcatcacaccaccccgttgttgattagtttcctataacagcaagacatgaagtgttttattccataattAGCAAAGTGAACATGTTTGAGTTTTCAGACAGGAATTatgttttgtagattttttgaaggggtgcacaaacttttacactcaactgtgtgtgtgcagtgatttCTGATGTAAAGATGTGATGATATTAATGTACAGTCAGTTGTAAAGCTATACAGAATTCTGATTTACctgatttattaattatataaatagtgGTATTGTATTACATATGAAGAGTGTATACAGGAGTGTATTCAGCCACCAGGGGGCAGTATTCCTGCAGTGTCACACACTGTGTGCAAAGGggttattgtgtgttttgtatgcTTGTTTGTGGGGTTTTGCTTTGTCCACACATCACCGGTTTAGGTTTTGGAAGCCACAGTATAATTGTATCCTGAAGGAATGTTGTGTTGAAGCCATAATAGGAACAATTTAAAACCTCCAATAAACAACGTTCCTCCTTAAA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367378 lncRNA upstream 88998 18467803 ~ 18471024 (+) True G310183
TU367413 lncRNA upstream 114988 18444085 ~ 18445034 (+) True G310208
TU367402 lncRNA upstream 129432 18427425 ~ 18430590 (+) True G310201
TU367268 lncRNA upstream 437767 18122030 ~ 18122255 (+) True G310084
TU367179 lncRNA upstream 516508 18040882 ~ 18043514 (+) True G310007
XR_003403812.2 lncRNA downstream 31705 18596516 ~ 18601724 (+) True LOC113538055
TU367657 lncRNA downstream 37567 18602378 ~ 18602580 (+) True G310416
TU367661 lncRNA downstream 48704 18613515 ~ 18615654 (+) True G310420
TU367662 lncRNA downstream 51879 18616690 ~ 18617001 (+) True G310421
TU367666 lncRNA downstream 66904 18631715 ~ 18631944 (+) True G310425
XM_026932835.2 mRNA upstream 1341 18553402 ~ 18558681 (+) True si:ch211-266k22.6
XM_026932836.2 mRNA upstream 1341 18553402 ~ 18558681 (+) False si:ch211-266k22.6
XM_034314062.1 mRNA upstream 1341 18553402 ~ 18558681 (+) False si:ch211-266k22.6
XM_026932440.2 mRNA upstream 19296 18477084 ~ 18540726 (+) True phactr3b
XM_026932441.2 mRNA upstream 19296 18501272 ~ 18540726 (+) False phactr3b
XM_026932410.2 mRNA downstream 72782 18637593 ~ 18645518 (+) True hp1bp3
XM_026932543.2 mRNA downstream 81900 18646711 ~ 18654039 (+) False sh2d5
XM_026932545.2 mRNA downstream 81933 18646744 ~ 18654039 (+) False sh2d5
XM_034314340.1 mRNA downstream 81967 18646778 ~ 18654039 (+) True sh2d5
XM_026932544.2 mRNA downstream 82004 18646815 ~ 18654039 (+) False sh2d5
TU366607 other upstream 1296359 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2058338 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 2065883 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 4038875 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 4083637 14370788 ~ 14476385 (+) False asic1b
TU367680 other downstream 122586 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 122642 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 522214 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 943444 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 1204179 19768990 ~ 19783913 (+) False vamp3

Expression Profile