RNA id: XM_026932784.2



Basic Information


Item Value
RNA id XM_026932784.2
length 955
RNA type mRNA
GC content 0.47
exon number 7
gene id nicn1
representative True

Chromosome Information


Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15863456 ~ 15877266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GCACAGACCGGAAGTAGCGCGGACCTGTATCCCGGAAAGATGCTCAGACAAAACATGCTAGCTATTCGTTTAGCAAAcgcattttgtaaataaaagtgCAGTTGTACTGAGTTTTATGTCTGCTTTAAAAGTAAGTTTGCTATAAAGGTTGACAGCTGCGgctttttaaatgttaagtAGCTACCTTTAACGCAAGAGAGTCCACCATCGGTCCAGCACCATGCGCGGTGATCCAGTGGACTGCATAGTGAAATCCCCAGTGGCTCTGCAGCTCGGCGATGTGGTGACCGATTCAGTCCGTCCCGGTGTTTATATCACAGACGTCGTACTTGCAACGCCGGTCAATATTCAGGAAATCTCCTTCAAGAACTACTACACAGCCTATTTGACGGTGCGAGTGTTGAAGAATGAGGAAGGGAGTGACGAGAGATCCGCTAAGTGGTTCACCTGTGTGAGAAACTATGGCCTGATGTCCAGTCCACACACTGAAGGAGGATCACAGGACTACTTTTCTATCTACAGACAACAGATGCTGACGGATCCAGATAACGTTATTACCGTGCGGCTCATACTGAGACAGCCTTCTTCAGTCTGGCTGAATTTCAACATAGAGGACATCAAAATATACTCATTGGCAGACGAAgAATCAGAGAGAGACGTTCCTTCCTGGTTATCTACCATCACACCTGCTGAAGAGCCTTTTGATTTGAATGGGCTTCCCGATCCAGACACAGTGTCATCTACTATTCAGCACATGTGGGCTCTCACTGAGATCATGCAGTCAAACCAGACCTCCGCCTCCATCGGCCGCTTTGACatgcttttatctgaAGTGAGGCCAAACACAGGCCAAGCATCAGGCTGTTCAAAGACTTGATAGAAGTGCTGCAGAACTAAGCGTTCACCACCAGACCACCAAGCAAGTGCAAGACAGTTTTAGGAAGAACCAAAGGAA

Function


GO: NA

KEGG:

id description
K16607 NICN1; nicolin-1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU365421 lncRNA upstream 63566 15756890 ~ 15799890 (+) False dag1
TU365380 lncRNA upstream 449634 15412099 ~ 15413822 (+) True G308404
XR_003403808.2 lncRNA upstream 455815 15393609 ~ 15407641 (+) True LOC113537967
TU364954 lncRNA upstream 1063314 14798973 ~ 14800142 (+) True G308018
TU364930 lncRNA upstream 1082698 14699997 ~ 14780758 (+) True G307997
TU365743 lncRNA downstream 116129 15993395 ~ 15994043 (+) True G308737
TU365764 lncRNA downstream 143950 16021216 ~ 16022142 (+) True G308758
TU365769 lncRNA downstream 150623 16027889 ~ 16028286 (+) True G308760
TU365773 lncRNA downstream 160150 16037416 ~ 16037632 (+) True G308764
TU365774 lncRNA downstream 160391 16037657 ~ 16037976 (+) True G308765
XM_026932807.2 mRNA upstream 68029 15766022 ~ 15795427 (+) True dag1
XM_026932810.2 mRNA upstream 68029 15766651 ~ 15795427 (+) False dag1
XM_026932808.2 mRNA upstream 68029 15767749 ~ 15795427 (+) False dag1
XM_026932439.2 mRNA upstream 474328 15385294 ~ 15389128 (+) True rbm15b
XM_026932414.2 mRNA upstream 480508 15375847 ~ 15382948 (+) True manf
XM_026933001.2 mRNA downstream 612095 16489361 ~ 16501684 (+) False amigo3
XM_026933000.1 mRNA downstream 612095 16489361 ~ 16492648 (+) True amigo3
XM_026932620.2 mRNA downstream 795554 16672820 ~ 16687543 (+) True ccdc66
XM_026932622.2 mRNA downstream 795554 16672820 ~ 16687543 (+) False ccdc66
XM_026932444.2 mRNA downstream 1004736 16882002 ~ 16891308 (+) True atp6ap1la
TU364869 other upstream 1342309 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 1387071 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 3400920 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 4347643 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 4382356 11480669 ~ 11481100 (+) True G305955
XR_004580181.1 other downstream 612095 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 612095 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 1383713 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 2810131 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 2810187 18687453 ~ 18692014 (+) False snrpe

Expression Profile