RNA id: XM_026932786.2


Basic Information

Item Value
RNA id XM_026932786.2
length 3057
RNA type mRNA
GC content 0.45
exon number 12
gene id pmela
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12585125 ~ 12595797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCAGACTCATTTAAAAAAGGTTTGGCACTCCTCAAAGTTCTTGACTTGGGCTGTGTTTCAGGAATTGTTAAGGATTGAACCTGCTGGGTGGGGGAAGAAGTGGAGAATGAGAACAGCTCTTATAGTTCTGGGTTTGACCCTCTCTTTGGCTGCTATTGCAAGGGCCAGAACCCATTTTAGCCGCTATCGCTCATGGAATTCGCGAATGTACCCAGTGTGGAGAGATGGTGATCCCAGATACAGGGACTGCTGGAAAGGTGGACAGGTAACATTTGACATCAAGAATGATGCCCCAACCCTGACAGGAGCCAAAACAACATTCAGTATTAATGTTCTTCCTCCCGGGAATCAGACGGTGCTGCCTAATGGGACAGTGGTGTGGAGCCAAAACTGCACTGTTAATGGAACCCATCACATGAAGGGTGAACATGTTTACCCAGAATTCAACACTTCCCAAGAATGGACAGGGGTTTTTCCTGATGGTACACCATTCACTACAAGATATTCCAAGAAACCTCGCTTCATCTTTGTGTGGAAGACTTGGGGTCGATATTGGCAGATGGCTGGTGGTCCTTCCTCTGCACTCACTATTGGAACAGACAATGTGCCATTGGGCTCTTACAACATGGAGGTGGTTATTTATCATTGCCGGGGAAAGGACAGGTTCATTCCTCTTGGATACATGTCTACACAGTTTTCTATCACagATCAGATTCCATTCATAGTGACTATGTCCCAGACTGGTGATGTTAACCAGGCAGATCAGAGCTTTATCCAGAGTCGACCTGTAACCTTCAACGTTGGTGTCCATGACCCCAGCCAATACCTCAGTGGATCTGACATCACCTTTACCTGGGACTTTGGGGACAACAGCGGAACGCTTATCTCCCATCAACCCtctgttacacacacttacGTCTCAACCGGCTCATTTAGGCCACAGCTTGTGCTGATGGCTGCCATCCCAaatggctgtgtcccaaatccaACTGCTGGTGGGGTCGTAACTGCAGCCCAAACAGTGACAGTGGCATCAGAAGCTCCAGCTGCACAAACCACCAATATGGCTGCCTCTCTTCAGCCTGTACTCGAGCAAGAAAGCATAGCTTCTGCTGTTCCAGCAGCAGCTAACGACTTAGCTGCAGCTGCAGCTGATGATCAAGAGGCAGTAATAGCTGCTGAAAATCCAGTTTCCGATGTTCCAGCCACTGGTGAAACAGTTACAGATGGTATTGTAGAGACAGAGGCCCTTACAGTTACTGATGTTGCTGCATCTATCACCCCTATTGAGGAGAATGTAGTCGAGTCAGCTGTCTCCGAAGCTGCAGTTTTGGAAGCTGCAGCAGCTGCCaatggagagacagatacaTTAGCACCTGTTGCagatgttattattaatattgtggCCACAGATGCTACGGTTGTTCAAACAGTGCCATCTATAGTACCAGTGAATGAGGGTGAGATTGTGGAAACTGTAAATGAAGCTACTCCAAATGAAGTCGTAGCTGAAGCTGCTGTAAATACTGCCCCTGCTACAGTTGCTGTTATTCCTACCACATCTCCAGTGACACAGATTGAGATTGTTGCCGAAGCAACAGAGGAAACACAAGCTGCTCTGGTTATTGCAAAACGACAAGCTCCAGAAATTCCAGCGGAGGGAAACTGCATGATTTACCGCTACGGCTCTTTCTCCTCAACCTTGGATGTTGTTCAGGGAATTGAGAGTGTGGAGATTGTGGAGGTGAGTAATGTTGCAGTTTTGGCCACCAACGTGGAGCAGAACGCCGTGGATCTCACCGTCACCTGCCAGGGAAGCTTGCCGAGTGAGGTGTGTACCATGGTGATGGACTCAGACTGCATCAGTCCTGTGCAGACCGAGTGTAACGCTGTGACTCCGACTGAGTGCCAGATGATCCTCCGCCGTTTCTTTAATGATTCTGGAACTTTCTGCATTAATGTGTCTCTGACTAATGATGTCAGTTTTGCTGTAACCAGTGCGAGGCTCAGTGTCACTGTGGATTCAGGCTCCTCCACGGCAGGCGCTGCCACTGCAGTACTCGGTGTTCTTGTGCTCGTCTGTGCTCTAGGCACCATTGCATTAACTTACAGgcGATTGAAGGCACACCATGCGTTCAAAGAGAACTCGACAGATGGCATCATGGGTATTTCTGGTTTTAAGTCTGTTCCAATGTTAGTGTGGAACTTTCTGACCCGACAGAGCACTGCGGAGAGCCGCCCTCTGCTGCAGGGGAGAGtggtgtgaacacacacacacaacactcacacacactgctcacatacactacacacaatccacacacacttatatttGTGCtgatgttacatttacataatcCAGCTAGTGGCTaatgtttattttggtttaaaatagTATTACAGTGTTATGACCAGATTAATGGGACAAGAATGCAACACCGGGTTTGTCCCAGGTGAAAAAGATGGCTGTCTTTATGCTGTCTTCTATATGAGCCTGACCTTATCTTCAGAGTGAAAACACTGCTAAAAAAGTTCTGCCTACTTCTGAACATAATGCAAGGGAATTTTGAAGCATACCCAATACTAATAACaacattgtgtgttttgaatATAGAAATGTTATAGCTTAACTGATTATCACTGCATgcctaatacacacacaacaccacacaccgTGTTAGGACTTCTCAAGGAAATGGATGAATAATTTGACTAAAGCTTTATGTACCATTATGCAGAACCACAACATGCTCGTAATACACACTCTTAATAGAGAGGTAGATTAGATGCATTTCTTTGAATGAATATATTGATATCGacttgaaatgaatgaaagaaaagagaatgcCCAGTATCTCGATCAGTGTTAATTAAAACTGGCCTTATTCAGTTTTGCTTTATGGTTTTGCTAAATAACTGCTACAGATCATTTATGAGTAACACAAATCCTAGCTGACAATGATGATGTAGTTCAGATCTGTTAAGTTTGAGGTGCTATGCTTTTCTCCATTACTGAACACTTGTTATCCTTcaataaagacatttttgtgCTTTA

Function

GO:

id name namespace
GO:0048069 eye pigmentation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363232 lncRNA upstream 11366 12572422 ~ 12573759 (+) True G306503
TU363205 lncRNA upstream 136751 12437199 ~ 12448374 (+) True G306479
TU363193 lncRNA upstream 289396 12295369 ~ 12295729 (+) True G306470
TU363175 lncRNA upstream 295368 12284951 ~ 12289757 (+) True G306452
TU363151 lncRNA upstream 430575 12154295 ~ 12154550 (+) True G306433
TU363513 lncRNA downstream 201951 12797748 ~ 12797982 (+) True G306744
TU363525 lncRNA downstream 308411 12904208 ~ 12904841 (+) True G306756
TU363733 lncRNA downstream 600678 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 692992 13288789 ~ 13293439 (+) True G306937
TU363757 lncRNA downstream 735890 13331687 ~ 13334245 (+) True G306959
XM_026932943.2 mRNA upstream 22384 12533236 ~ 12562741 (+) True LOC113538096
XM_026932942.2 mRNA upstream 22896 12533239 ~ 12562229 (+) False LOC113538096
XM_034314397.1 mRNA upstream 57847 12496309 ~ 12527278 (+) True timeless
XM_026932900.2 mRNA upstream 57847 12496309 ~ 12527278 (+) False timeless
XM_026932892.2 mRNA upstream 99150 12474056 ~ 12485975 (+) True prph
XM_026932417.2 mRNA downstream 3272 12599069 ~ 12606053 (+) True cdk2
XM_026932919.2 mRNA downstream 12556 12608353 ~ 12626608 (+) True sarnp
XM_026932714.2 mRNA downstream 98489 12694286 ~ 12775144 (+) True iars1
XM_026932434.2 mRNA downstream 193695 12789492 ~ 12956445 (+) False atp2b2
XM_026932435.2 mRNA downstream 193695 12789492 ~ 12956426 (+) False atp2b2
TU363207 other upstream 122589 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1069312 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1104025 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1258765 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1269689 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1774991 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1918813 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3893564 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3893564 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 4665182 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile