RNA id: XM_026932796.2


Basic Information

Item Value
RNA id XM_026932796.2
length 1442
RNA type mRNA
GC content 0.48
exon number 4
gene id ppcs
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11061008 ~ 11064101 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATTTTGAACTTGTTTGTCGCCTCATACAATGAGCCAATCAGGACAGGCGAGCTCGCACATGCGTAGTCCACCAGGAAGTCGACTTGCGGTCACCTTTTAAATAAAGAGTTTAAACTCTTCTGACACTTGGTTGTGGTGGTCCAGTGACACGcattcacacaaaaaaaCCATGTCGTTCGTTAATGCAGGTGTAGACGCTATGGCGAGCAGCCTGAGTGAGGAGTTTGCTGTGCCGGCTCATGTGGAGGAGGTCAGGAGAGTGATGGCGGCGTTTGCGGAGCAGCATGGAGCTGCAGGTCGCATGGTCGTGCTCATCACTTCGGGAGGCACCAAGGTTCCTCTGGAGTCCAGGACCGTGCGCTTTCTGGACAACTTCAGCAGCGGGCGGCGTGGAGCCTCGTCAGCGGAGTATTTCCTCGCGCAGGGGTATGCTGTGATCTTCCTGCACAGACAGCGCTCTCTGTACCCCTACACACGCCTCTACACGGGCGTCAATCTGCTGGACTGTCTGACATTACACCCTGTTCACGAGGGCTCTGGGCTGGTCGCAGTGGATCAGACCAAGCTGCCAAACATCACAGATGTCCTGAAGAGGTACCAGGCAGTGAAATCTGGAGGGTTACTTCTTCCAGTGGAGTTCAGCACCTTATCCGAGTACCTCCACCTTCTCAAAGCTGCAGCACAAGCTCTCAGTTCACTggGTTCCAAAGCCATGTTTTATTTGGCTGCGGCTGTTTCTGATTTCTATATCCCACCTTCTGAAATGCCGGAGCATAAAATACAGTCCTCCAATGGACCTCTACAGATAAGCATGAAAATGGTACCTAAAATCCTTAAACCACTGGTGAAGGACTGGGCCCCAAAAGCATTTGTCATTTCATTCAAGCTGGAAACGGATCCATCCATCCTCTTGGAGCGAGCTCGTTGCGCCTTGGACATCTACAAACACCAGGTAGTCGTGGCCAACGTCCTGGACACACGGCACGGTTACGTTGTCATTGTGACTAAAGACTCCCAGAAAGAACTGGTCCTTACAGAAGAGGAAGTTCAGCGAGATGTTGAAATTGAAGAGAAGATTGTCAAGAATttgtcacatgcacacactcagttCGTAAACCAAAAAGGTTAGAAGTGGATTGGCCATCTCATAACTCCTTGTTCTTCACTTAACTTAAAATAGTTCAAGTATAGGTCTAAGTGCAGGTTCTAAATCAATGGAAAATGAAGACTCATACATGCCTTTTAATTCACAGTAAAACTAGAATCAACTCAGTCATCCCAAGATGGTGGGTGTTCTGGATAGAGTAACAAAATCTGACTTGCCCCAgctagatgaaaaaaaaagcatatacaccgatcagctacaacattaaacccactgacagatgaagtgaataacattgattgtcgttacagtggcatctgtcaatgggtgggata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01922 PPCS, COAB; phosphopantothenate---cysteine ligase (ATP)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362259 lncRNA upstream 260777 10797969 ~ 10800231 (+) False G305642
TU362260 lncRNA upstream 261880 10797969 ~ 10799128 (+) True G305642
TU362194 lncRNA upstream 388434 10667197 ~ 10672574 (+) True G305584
TU362193 lncRNA upstream 396794 10642266 ~ 10664214 (+) True G305583
TU362178 lncRNA upstream 519476 10541311 ~ 10541532 (+) True G305568
XR_003403810.2 lncRNA downstream 9661 11073762 ~ 11075590 (+) True LOC113538022
TU362371 lncRNA downstream 9794 11073895 ~ 11075543 (+) False LOC113538022
TU362373 lncRNA downstream 9794 11073895 ~ 11075543 (+) False LOC113538022
TU362383 lncRNA downstream 65187 11129288 ~ 11129487 (+) True G305734
TU362384 lncRNA downstream 70414 11134515 ~ 11134724 (+) True G305735
XM_026935673.2 mRNA upstream 287566 10768707 ~ 10773442 (+) True LOC113539694
XM_026935543.2 mRNA upstream 771193 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA upstream 771193 10280536 ~ 10289815 (+) True mon1bb
XM_034314339.1 mRNA upstream 771193 10280536 ~ 10289815 (+) False mon1bb
XM_026935605.2 mRNA upstream 922122 10102314 ~ 10138886 (+) True gnl3l
XM_034314395.1 mRNA downstream 14959 11079060 ~ 11107165 (+) False cpne1
XM_034314396.1 mRNA downstream 14969 11079070 ~ 11107165 (+) False cpne1
XM_034314393.1 mRNA downstream 14969 11079070 ~ 11107165 (+) True cpne1
XM_026932791.2 mRNA downstream 14980 11079081 ~ 11086693 (+) True rbm12
XM_034314394.1 mRNA downstream 28157 11092258 ~ 11107165 (+) False cpne1
XR_004580251.1 other upstream 287566 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other upstream 287566 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other upstream 287566 10768707 ~ 10773442 (+) False LOC113539694
TU362120 other upstream 547738 10512671 ~ 10513270 (+) True G305515
XR_004580199.1 other upstream 2502097 8501638 ~ 8558911 (+) False nfasca
TU362376 other downstream 47638 11111739 ~ 11112518 (+) True G305727
TU362445 other downstream 104358 11168459 ~ 11178473 (+) False unm_sa1614
TU362496 other downstream 150914 11215015 ~ 11221515 (+) False dynlrb1
TU362531 other downstream 250083 11314184 ~ 11315436 (+) True G305863
TU362537 other downstream 261503 11325604 ~ 11326360 (+) True G305869

Expression Profile