RNA id: XM_026932805.2


Basic Information

Item Value
RNA id XM_026932805.2
length 1637
RNA type mRNA
GC content 0.43
exon number 6
gene id rdh5
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14102055 ~ 14112510 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGACCTGCTTTAAGGGATAAACCCAAGGGATAAAGCCCTTTGTGAAACCTTCCCATTCTGAGGCAGCAAGTGGACACGCTCAGGAGGGCACACAGGACTTTTAGTAAGAACAGAGTGGTTGTTGTTTGGAACCTGCATCATTCAGCACTCCCCATGGACATGGAGCTAATATACGAATATATCAGTAAAGATCACCTGTTCTCGTACGCTCTTGGTGCCTTTGTGCTGTTGTGGGCTTTGATATGGCTGTACCGTGACAGCCTGGAAATCGACAAAATCAAAGAGAAGTACGTGTTCGTCACCGGCTGTGATTCAGGTTTCGGGAACCTATTATGTAAACGACTGGACAAACGTGGTTTCCGTGTGTTGGCTGGTTGCTTGACAGAAAAAGGAGCAGATGACCTGAAGAGAGTGACGGGACCTTATCTGAAGACCTGCATACTGGATGTTACTAGAACAGCTAGCATTCAGAACGCTGTGGAATGGACGAAGAAAGAGGTTGGAGACAGAGGACTCTGGGGGATCGTGAACAATGCAGGATGCTCGTTACCCATGGGTCCTTCTGAATGGATGCAGATTGAGGATTTCCACAGCACTCTAAGGGTCAACATGACTGGTGTGATTGAGACGACCATGAATTTTCTGCCACTCGTCAAGAGAGCCCGTGGCCGAATTGTTAATGTGGCTTCAGTGCTGGGCAGAGTGGCAGCGAACGGAGGTGGATACTGCATTTCCAAGTTTGCAGTGGAAGCCTTTTCTGATTGCCTCAGGAGGGACATTCAACATTTTGGAATCAAAGTGTGTATAATAGAACCTGGGTTCTTCAAGACCCAGGTGACAAGCCTGGAACCACTCGAACGGGAACTTCATCGCCTGTGGAACCAACTGACGCCTGAAGTGAAAGAAAGCTATGGAGAAAAATATCTGGATAAGTACATCAACGTACAGAGGCTGATTATGAATGCTATTTGTGATGCTGATTTGAGTAAAGTGACCAACTGCATGGAGCATGCTCTGTCTGCTGCTCACCCAAGGACCCGATACAGTGCTGGCTGGGATGCCAAACTCCTCTGGATCCCTCTCTCTTACATGCCAGCTTGTGTTGTTGACATTGCACTAAGACTGGTGTTGCCACGGCCTGCCAAGAGTGTTTTATAGATCCAAACTTAAGTTGAAATTGACCATATCAAGTGTTCCCTAAGTAATTTAGACAAGAGTTTAAAGTAGTATACTCAAAAGGATGATTTACTTGTATTTCCACTGTATTTAAGTGATGCAAAGTAACTGATCTTGCCTGTGTATATTTTGCCTTGTTCGATTAAGTTGAGAAATTGCTATCGTTTGTTCTTCTATGTTACAGGTGACATCTTGATCAATTCAAAATTGCCTTAGCTGCCAGTAAACCAAAAATGTCtgaccaaatattttgtttataaccAGCCTGTGCCTTTTTCTCACTATAATTTTTTTGGCTGAGCAACagcaatattttaaagaaagtatAATATAAGTTTCGGAAACACTAAAGATGTGAATAAAACCATTATTTAATACAATTAAGTCAAGTTTATGTAATAAAGTAAATTACACCAATGTATACctgtaaatcaataaaattgaattaaacaaTCTTAT

Function

GO:

id name namespace
GO:0035238 vitamin A biosynthetic process biological_process
GO:0001754 eye photoreceptor cell differentiation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364114 lncRNA upstream 5269 14096270 ~ 14096786 (+) True G307281
TU364127 lncRNA upstream 43853 14051835 ~ 14058202 (+) True G307293
TU364094 lncRNA upstream 85661 14015162 ~ 14016394 (+) True G307262
TU364104 lncRNA upstream 98224 14003608 ~ 14003831 (+) True G307272
XR_004580226.1 lncRNA upstream 141865 13940426 ~ 13960190 (+) True LOC117599900
TU364494 lncRNA downstream 35631 14148141 ~ 14148445 (+) True G307588
XR_004580186.1 lncRNA downstream 471057 14583567 ~ 14590821 (+) True LOC117599878
TU364901 lncRNA downstream 476515 14589025 ~ 14589232 (+) True G307971
TU364909 lncRNA downstream 485883 14598393 ~ 14598612 (+) True G307976
TU364930 lncRNA downstream 587487 14699997 ~ 14780758 (+) True G307997
XM_034314000.1 mRNA upstream 6036 14091935 ~ 14096019 (+) True bloc1s1
XM_026932632.2 mRNA upstream 21920 14065621 ~ 14080135 (+) True rbck1
XM_026932633.2 mRNA upstream 21920 14067365 ~ 14080135 (+) False rbck1
XM_026932816.2 mRNA upstream 162233 13852220 ~ 13939822 (+) True stab1
XM_026932641.2 mRNA upstream 255423 13816856 ~ 13846632 (+) True nisch
XM_026932802.2 mRNA downstream 1966 14114476 ~ 14132007 (+) True gls2b
XM_026932690.2 mRNA downstream 67273 14179783 ~ 14476817 (+) True asic1b
XM_034314332.1 mRNA downstream 67273 14179783 ~ 14476817 (+) False asic1b
XM_034314333.1 mRNA downstream 83813 14196323 ~ 14476817 (+) False asic1b
XM_026932688.2 mRNA downstream 258281 14370791 ~ 14476817 (+) False asic1b
TU363207 other upstream 1639519 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2586242 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2620955 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2775695 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2786619 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 258278 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 402100 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2376851 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2376851 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3148469 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile