RNA id: XM_026932816.2


Basic Information

Item Value
RNA id XM_026932816.2
length 9563
RNA type mRNA
GC content 0.45
exon number 69
gene id stab1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13852220 ~ 13939822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGTTCTCCTCTCTTTCGAAATGGTGCATAGTCAGTTAGAGAACCTCCCTTGCTCACCAGGAACAGACTGACACTTCATTCCCCAAAAGCAAGAAGAATGCTAAAGAACTCGGTGGACATGAAAGAGTGAAACTTCTCCATCCTGCCTCATAACTCATGGTTTAAGGGAGGTTTGGGTGGATTTTTTCTTGCATGCTTATCTTTGAGGATTTTAGGAGTGCCCAAGTGTCCTTGATCTCAGAAAGCAGCCATGCGTTATCTCTTCATTTTAGGACTCATAGTGCTGTGTAGTTTACAAATCGAGGCTACCTCGAATCGCTGTGATGAGCCACGCACTGTACGCCACTCCACTCTGTGCACGTCGTGCGCTGCTGCACCTGCTATTGTCTGCCCACAAGGCTACAAGAAGACTTCAACTGATGCTGAGTGCCGCTACACGGTGCAAATCGGCGATCGCCTGCTGGAGCTGCCTGGCTGCTCTCGCTCCTGTGAGAAAGTCACTCTCATAAAGCGATGCTGCCCCGGCTTCTTCGGGTCTCTGTGTTCACCGTGTCCTAGCTTATCAGGCAAAGTGTGTAACTGGCATGGTACCTGCATGGATGGTGAATCAGGAAAtggcacctgtgtgtgtgagGAGGGCTACACTGGGTTTGTGTGTCAGAAATGCTCTAATGAGAAGACCTACGGTGAGCGCTGCAGCTCAGTGTGCGATTGTGTACATGGAGAGTGTAATTCGGGTCCAGATGGAGATGGACGGTGTTACTGTCAACCACCATATTCAGGACCAAAGTGTGACAAAGTTACGTCTTCCTGTTCAGACTGCAGTCCCTACTCATACTGTAAAGGAGAGGGTCCGACTGCTCAGTGCGAATGCCTTCCATCCTTTTCAAAGGTTGGACGCGTCTGTGTAGGTGTTTGCAGCAAGGATGTTTGCGACATAAATGCAGATTGTTCGTACAAGGGTGTAGGGCAATTTCAGTGCACATGCAAAACTGGCTTCGAGGGAGATGGCAAATTCTGCACCCCGATCAACTCATGTTCTCGGAATAATGGAGGCTGTCCAACAAACTCCACTGTTTGTGAAAACACAGGACCAGGCCAGTCAATATGTGTATGTCAGAGTGGGATGGAAGGATCAGACCCTCGTGCTGGCTGTAGGCTGAAATCTGCTTGTAAGGAGAGCACATGCCACAGGAGTGCACGATGTGAAACTGGCCAAGATGGAATAGCCAGGTGTGTTTGCAGTCAGGGACAGATCAGTGATGGGTGGCGCTGTTATGGAGATATCATGGAGCGTGTTTTGGAACTGGATCAGGAAGGCAGCCACGCAGGAAACCTCACCGGAAGCATTGCATTGTTTGAGAGAGGATGTAAGCTCATTCTGAGCAAACATGGgccatttacagcattcatccCAGTGGATACTTCCCAACTATCTATGGGCAAACTTAACCAGGCAAGAAGAGCAGAAGCCATCTGCAAACACCACCTCATTCTTGGCCAACGTCTTTACAAAGATTTGGAGGGACAAGATTTGTGGACATATGGAGGGGAAATTATGAGATTTAAACCAAACAAGAAGTTTATTTCAAAAAAAGATCCTGATACACCATTCACGATAATCAGGAGTGACATACCTGCATCCAATGGAATTATTCATATAGTGGACAAAGTCTTTACTTTTGCTACTAAAGACACTTCTGACAGTGTTGAGTTCTCTTCAAAAACCATCGGGGACATTCTAGCGGAAGATGCCAGATTCAATAGATTTGTATCTCTGATAGATAACTGTGGAGCTCCAATGCCTCTCCAAGGTCCAGGGCCACTCACACTGTTTGTCCCAACCAATAAAGCCGTGGACAGATCTAGGGACGGTAGTATTATATACATGCTAAAGGATGCCAAGCACAAACTCCAGGAGCTTCTGAGGCACCATATGTTCTCTCAGGCAGCAGTAACTGTGGACCAGCTGGCTAGCATGTCAGAGATCCAAACCATGGCTAATCAGGTCATAATGATCAATGTCACTGGCGATGGAAGAGTGTTGCTCACTGAAAAAGGAATACCTCTTGAAGCGAAAGATATTGTTGCATCCAATGGAATCATTCACATGATTGATGGACTTCTTGTGCCGCCATCCATTGTTCCGATCATGCCACATAGGTGTGATGTTAATGTGACCACCATCATTATGAGTCCATGTGTAATGTGCAAATACATTTCTGAGTCACAATGTCCACCCGGAAGCGAAGAAGGgTCTGGCCATCTTCAAAATTGTGAGCCTCTTCCTGATCCACGATGGAGTGAATTTAACACCGTACGAGGCTGTGCAAAATATTGCCGAGCAAAACGAATGAGGGCCGAATGCTGCAAGGGTTTCTTTGGGCCTGACTGTAAACCCTGTATTGGAGGTTTCCAACACCCATGTTATGACAAAGGCACTTGTTCTGATGGCATTTATGGCGATGGCTCATGTAAATGTAACCCAGGCTTTATGGGCATCGGATGCCACCTCTGCTCTGACCCAAAGAAACATGGAGAAAACTGTGATGAAGATTGTCGCTGTGTTCATGGCGTATGTGATAACAGGCCTGGCAGTAAGGGTGTGTGTCGCAGGAACTCCTGTCTGTCTGGATACACTGGAGACCTTTGTGACCTCACAGCCACACCCTGTGATTCAGACGGCACCTCCGAACACTGCCATATCCATGCTTACTGTACACGCATTGACAACATAAACACgtgtgtgtgtaagcctgGATATGACGGTGATGGATACTCCTGCACTGAAGCCAATCTGTGCCTCAAACCCGACAGAGGAGGCTGCCACATAAACgcacagtgtgtgtatgcaggccCTGGAaatgtgtcctgtgtgtgtaatgagggATGGACAGGTGatggtgttgtgtgtatggAGATTAACAACTGTTTAATGGAGAATCGTGGTGGGTGTCATGAatacgctgactgcacccccaCCGGACCTGGCCAGAATCAATGTGCCTGTAAGAAGGGATTCATGGGAGATGGCCTCATGTGTCAGATTGTTAACCCCTGCCTGACAGACAATGGAGGCTGCCATGACATGGCCGTATGTTCATTTAATAGCAGTGGCATACAGAAGTGTACCTGTCCACAAGATTATGAAGGAGATGGCACCACATGCTATGGGAATATACTGATGGAGCTAGATTCGAACTCAGATTTCTACACTTTCAACCGCTATCTACAAAGACACCCGGTGATCAGTGCCGACAGCAATGTGACTGCTTTAGTTCCCTCCAAGGATGCATTTAGAAATCTGAGTGGTGGGGAAGAGCTGTTTTGGACTGACTTCTACCGCCTTCCTTTCCTCCTGCAAGCTCACTTTTTGGATGGCATTTACACCTATGATGACTTGAGGAAGCAGGTCAATAAAACAGTCCCAACtaaattaaagacaaaatgGGAGATCACAGTTAAAAACGGGGAGCTAATGATTGGTAACGCTACAATTCTTGTCCCAGATCTCCAGGCAACCAATGGGTTCATTCACATCATCGATACAGTTCTGAAACCACCCATTTCCCAGATCCCCCCTCCTCCCCCTGATATAATGGAGGTCCTCAGTAAGACCCCCTCATTCAGCCTGTTCAGGGAAGCAGCACTGCTGTACAATTTAACAGAAAGCATCACAACGAGGGACTTCACTATCCTTGTTCCATCTGACAGTGCAGTTAAGGATTACCTGAAGAAAACAAATTCTACACGTCTGGATGAAAATGTTCTGAAATATCATGTCATTCCAAGAGAGCAGCTTTTCCCTGAACACTTGACTGATGGGACGTTAAAAAATACACTGCTTGGGAATGAGTATCaaatcatgattcatttaaaCAGGGAAAATAAGACACTCATTAATGATGTAGCATTGGATGGGAACTTCACTGAGATAAGGCACGGTGTCATCATCAGCATCTCCCGGGTTTTAGTGATTCACAAAAACTACTGCAGCAAAGATGTGTACATGAAAGCCTTTGGAAGGTGTGGTCCATGCGACTCAGCTCCCAGATGCACATTGAACGGCAAGCCTGTGAAGGATGCATTCCCTTTGAATATGAAGTCCAATTGTAGATACAGGACAAGAGTAGGACGAAGGAAAAAAATGGTGCCAGGCTGCATGATGGACTGTATAAAAGTTATTAAGGATCATGCCTGCTGCCCAGGATACTTTGGACGTGACTGTTTTAAATGCCCTGGAACTGTGGACAACTGGTGCTCGAACAATGGCAAATGCCAGGATGGCCTTTGGGGCAGTGGGGAGTGTCTGTGTAATGAAGGGTTTCATGGCACAGCGTGTGAAATGTGTGAGCCTGGAAGATATGGCAAAGACTGCAAATCAGAATGTCACTGTGAGCATGGAAAATGTCTGGATGGCATAGATGGTAATGGCCAGTGCATCTGCTACAAGGGTTGGAAAGGAGTGAACTGTTCTGTAGagaTCGTTAATGATGAATGCGGAGGCATTTGTGATCAAAATGCCAActgtttttcTCCGGGTTCAGGAGTAAAACCAACATGTATCTGTGCAGCGGGTTACCATGGAAACGGCACCTTCTGTCAAGaaattgACTTGTGTGCCACCAGTAATGGTGGCTGCTCAGAACATGCAACATGCACAAAAATCTCACCTGGAGAAAGGAGCTGCACATGTAAGAAAGACTACACTGGAGATGGAACTGTGTGTCTAGAGATGGACCCCTGTCTAGTTAATAGAGGAGGATGTTCTGAAAATACAGATTGCATCAAAACTGGaccaaacacaGCTGCATGTATTTGTAAACCAGGCTTCGCTGCACAGAGAAGACTCTGCATGCCGATAAATCCCTGCCTAAAGGACAACGGAGGCTGCAGCCCCAACGCATTGTGTCAATACACCGGCCCGGGTGAGAGGAACTGCACATGCCGATATGGCTACAAAGGAAATGGTATCGAGTGTATGGGCACCGTCAGTAGAGAACTTCTTCACAAAGCTGCTGCTAATTGGTTCCGGAGAAATCTCGGAGCATCAAGAGTCAGGGATTTGTACAGTAGAGGACCGTTCACTGTATTTGTCCCTCACACAGATTACATTGGAAACTACTCGATTGACTTATGGGAGAGTAAAAACCGTAGCCCAGATCTGTTGCGATACCACATTGTAGGCTGCGAAGAACTCTCTGAATCAGAACTTAAGTCTATCACACGTGTGGTTGCTTCTTCTGGGCATGTGTTGAATTTCAGCGTACGAGATGGTGCTGTGTACATTAACGgtgatacaaaaataatcactaGTGACTATGAATGCTCTAATGGAGTCATACATTTCATAGATAAAGTCCTCATCCCATATGAACTGAAGAAAGAAACTGCAGGGGTTGAAGAAactttgAATGTTACTACCGCAGCAGAAACATATGGATATACCATGTTTGGCAAGTTGCTACAGAAAGCCAACTTGATGGATATGCTGCAGCATAGAGCATTTCATCCTTTCACCATGTTCTGGCCTACTGATAAAGCGTTCAATAGTCTGCCACAGGAGCAGAAGAACTGGCTGTACAGTGAAGATCATCTTGACAAGCTGCAGGCCTACTTGAAATTTCACATAATTCGTGACCAGCGAACAGTTGCTATTGCCCTGCCGACAGAAAAAACTGTCCGAACGATGTATGGATCGTGGCTGACGTTCAGTTGCAGCCAAGCGTTAACTGGGGATATTTTAATCAATGGAAATGATGCCAAGATTGTAGAACGCCACCTGCAGTTCTTTTCGGGGATAGCCCATGGGATTGACAAGGTTCTAGAGCCTCCAAACATAGGGGCACACTGTGATGACTTTTCACCTACAGAGATTAAAGGTCGCTGTGGATCTTGTATACATCCACCATCTTGCCCTTATGGCACTGTGTATGCTAACAAAACCAACGTGTGCAGTAGACCATGGAGCCTCTACAGACGCCATTATTTTTATGATGACTTCGAGTTTCCTAGCCCTTACAATTTTCAGCCATTCGGCTGTAACCGAATGTGTATGAAAATGTCATGGGTTTCAAAGTGTTGTAAGAACCACTATGGACGAGACTGTCAAGTCTGTCCTGGAGGCTTGGAGGCACCATGTGGAGAACATGGTGATTGTGAGGATGGGCTATATGGAACAGGGAAGTGTATATGTCacactggttttaatggaaCAGCATGTGAGCTGTGTAAGAAGAACCATTATGGCTCTAACTGCACAGCCTGTACATGTACCATTAATGGGAAGTGTGACGATGGCATAGATGGCGATGGCAGCTGTTTCTGCCAGGAGGGCTGGACAGGAGTGATGTGCGAGACCAAAATCGgTGTGAAGCCTGTATGTTCCCCTGAGTGCCACCCTAATGCTGTGTGCCTGCCTGAGAATCAGTGCCAATGTGAACCACCATATGAAGGAAACGGCTATAACTGCACAGctCCAGATTTATGTAGTGAATATAATGGAGGCTGCCATGAGCAGGCTGACTGCACACAGTCTGACATCAGTGTGATATGCTCTTGTAAACCCGGCTACTCTGGAGATGGCAATGTCTGCTCCCCCATCAACCTCTGTGTTGAGGAAGCTAATGGTGGCTGCAGTGACTTTGCAAACTGCATTTTCATTGGACCTAATGAGCGGCGATGTGAATGTCACCAAGGGTACGTGGGCAACGGAGTCCAGTGCTTCGAGAAGGTGGTGCCGCCTATTGATCGCTGTCTGGAGAACAATGGAGACTGCCATGCCAAAGCGATCTGCAAAGACTTGCATTTTCACAccAAAACAGCAGGCGTCTTCCACCTGAGATCACCAGCTGGGAGGTATGTGATGAACTACAGCACAGCAGAGGCAGCCTGCAAAGCTGAGGGAGCCATGCTCGCTACTCTGTCCCAGCTTTCTGATGCCCAACAGTTGGGTATGCACTTGTGTGTTGCCGGATGGATTGATGGGAAAAAAGTGGGTTATCCAATCCGCTATCCATCTCTTAAATGTGGTGACAATCATGTGGGCGTAGTCCAGTACAAGGATCCCGATGTAAACACTCCTTATGACGCTTACTGCTACAGAATTAGAGAGGTTACATGTGAATGTGGACCTGGATATGTTGGTGATGGAGAATTCTGTAATGGCAACCTCGCTTCTGTCATAGCTACCCATTCAAACTTCTCCATATTTTACTCTATGTTAGTGAAGTTTGCAGAGGCTGCTGAGGAGGGGAAAAAGCTCTTGGATTTTCTGTCGACCAGTTCATCCAACATAACACTTTTTGTGCCACATAACGCAGGATTTTCTGCAAATGAGACTCTGTCATTGAGGGATATAGAATATCATGTATCCTCAAACAACAGCCTTCACTACTATGAAGATCTGAAGCACAACACAGCAATCCCATCCCGGCTGGGTTATAACCTTAAAGTCGTAATAGCAACAGACAACCAAACACAAGCTGAGGATTCCCCACCAATAAAACTGGTCAATAAACGGACAATATTAATCTGGGATATTCCAGCCACTAACGGCCTGATCCACATCATTGAAGGACCGCTAAAAGCGCCTCCTGTCATTGTGACCCCTCCAACTCCTTCAGCTGTCCACTTGCAGTCCAGTGCACCCACTGTGACCGCCATTTTGATCGTTATTTTTATTGGAGGCGTGATTGCTGGTGTGGCATATTATTTCCTGAGACATAAGAATGATGCCTTTCGCTTCCAGTATTTTAAGAATGATGATGAAGACGGTACCTCCACTAAGGCCAGTGCCAATCCTGCTATCGTGTCCATCCCGAACCCTTTATACAGTGGCTACAGGGCATTCGCTGAGCCATTTGGGGAAGGAGAACAATGTGAATCACCTGCTTCAGTAGCAGCAAACACATCAAACCTCCTGGACTAGCACTTAGaagttcaatttttttaaaccagtgttTCAATCAAAATTTTGCAAACTTTTCCTACAAGCATGTTGTGTCTGTTACATAAGCCTTAACTTTTCCCTTTCAGCCTTGATCATTAATTAAAGCTCCAGTCAGCAAAAGCTTGCAGATTTATAACAGTAGCATTACGTTATGTTTAATGGTTGTCTTTATCCAAACCAACTTACATATGAAGAGAATACAATCCAAGAACAGAGCTGCGTAGTTGACAGTTAAGGTTTTTAATCAAGGGCCCAACAGAGTATCTCAGTCAGCCATTTTCCACCAACTTGTCCATTGTCACTTCTCAGCCAGTAAAACTGGTTTGAATCCAGAACCAAAAAGCTGCTGCTTCTAATTATCAGTGACTCAACAGCTTGGCGAGTCCTCATTTCATTGTCATAGaaaataacttatttatttacataattgccaataacataaaatgtaatttacatGTTAAGAGATTAGTTTGGTGTTGTAACAATTAATCAGTGGCTCATTGAAGAAACAACCATTCAACTGGGAGCTGAATGAAAGCTACACTGCTAATATTAATGCTAGCAAAATTTTATTCAGAATGAATAGCAAAGTTCATCTCTCGTCTTATTGTAATTATTGTCCATAGTGatgtctctgtgctgttttcAGTAGGAATGTGGCCCACTTCTCAAAAAGGTTTGCTGGTTCCCAGATCAAGTACTAGAACCATGTTGGAGGAAAGGTCTATGGCAAGCCTGGGATTTGGAATCACATCCCTTTGATCACTAGTGGCAATTCATTTTGCTAGAATATACCATTCAAATTTGAATTCACCGCACTATTTGATATGGAGGGTGTCACGCTTTCTCCAGTAATACTGTGTATAAATAGGAACACAAGCTGCTATATTGCATATGTCTGCCAAATTTAATACAAACTCTTTCAGTGGCTGCAATGataatttatccaaaaaaaacagttgagATGGTTACCACAGGGATAACCCTGCCAaacccattattattataagaacaAAGAGtctttaatataataatgttccCCCCCAACAAAATTGGCCAGAATGTGTTGCTCAGGTTAACTTTGGAGATAATCCCACTGGTTTGATGATGGTGCAATTTCAGCTGCTTCTGACTGGCAATGTTAATGATCACCATTTGGCCATGTGTTACTTCATAACACTAACAGATTGCTGTCTGGAAAACTTGGCTGATCCAAAATGTCACACTCCAGCTGTAATTTGAGAGAGTTAGCAGATTAGTTTGCCTGCTTGTGTATTCATTAGCATGTATCAGGGATAAGGCTTTGGCCTTGACGAAAGAGGTTTTTCGTGTTAAATAAGATGtggacaaaaatgaaaacaaactcaGGCATACTTGGACTTCTGATGTAATTTACAGTGGTATGTTTGCTTCATAACTGAACTTTGtctaaatactgtaataaaatgaaagctCAGCTGTTAAGGTGGGATCTGCAATGTCACTAGATTCTCAGGACTGCCAGAGGACCACTGTTGGGCTCTaaacccttaactgctcagcTTTGTCCCTGAATAAGATTCTGCCTCATTTGTGAGTTATTATGAATAAAATCTTCAAATGTCTGCAAAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K19020 STAB1; stabilin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364036 lncRNA upstream 159308 13691106 ~ 13692912 (+) False ippk
TU363977 lncRNA upstream 328166 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 350389 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 501540 13350453 ~ 13350680 (+) True G307079
TU363759 lncRNA upstream 518972 13332806 ~ 13333248 (+) True G306961
XR_004580226.1 lncRNA downstream 604 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 63786 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 75340 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 112013 14051835 ~ 14058202 (+) True G307293
TU364114 lncRNA downstream 156448 14096270 ~ 14096786 (+) True G307281
XM_026932641.2 mRNA upstream 5588 13816856 ~ 13846632 (+) True nisch
XM_026932646.2 mRNA upstream 18729 13816855 ~ 13833491 (+) False nisch
XM_026932645.2 mRNA upstream 18735 13816855 ~ 13833485 (+) False nisch
XM_034314228.1 mRNA upstream 18735 13816855 ~ 13833485 (+) False nisch
XM_026932644.2 mRNA upstream 18735 13816855 ~ 13833485 (+) False nisch
XM_026932632.2 mRNA downstream 125799 14065621 ~ 14080135 (+) True rbck1
XM_026932633.2 mRNA downstream 127543 14067365 ~ 14080135 (+) False rbck1
XM_034314000.1 mRNA downstream 152113 14091935 ~ 14096019 (+) True bloc1s1
XM_026932805.2 mRNA downstream 162233 14102055 ~ 14112510 (+) False rdh5
XM_026932804.2 mRNA downstream 162233 14102055 ~ 14112510 (+) False rdh5
TU363207 other upstream 1389684 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2336407 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2371120 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2525860 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2536784 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 430966 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 574788 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2549539 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2549539 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3321157 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile