RNA id: XM_026932826.2


Basic Information

Item Value
RNA id XM_026932826.2
length 977
RNA type mRNA
GC content 0.56
exon number 3
gene id smug1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20896980 ~ 20901411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actacacatcccagaatgcaccacGGCTCCAATGTCTCTTTGTTGCCGGAAAGCTACCGGAGAATGCTAGGACACAATGATCTTCCGAGGTTGGATAAAGGAGACTCGGctcaggaggaggagcagcaggcGGAGAAAATCATCTCAAACCCAGATGGATTTTTCCCAGACTGCTCCCCAGCAGTGGCTCAGTTTCTCCAGGCTGAGCTGGAACTCAGCGCTCGTCTGCGAACTTTGACCTTTAGGGATCCGGTGCGTTATGTGTACAACCCGCTGGAGTACGCGTGGGACACGCACCGTCTCTACGCTGAGAAATACTGCCACGGCGGACAGAGCGTCCTGTTCCTGGGGATGAACCCGGGACCGTTCGGCATGGCGCAGACCGGAGTTCCATTTGGTGAGGTAAAGGCTGTGCGTGATTGGCTGAAGATCTCCGGAGAGGTGGGTCATCCTCCTAAAGAGCATCCGAAACGTCCAATCAGAGGCTTTCTGTGCTCTCAGAGCGAAGTGAGCGGCGCGCGGTTCTGGAGTTTCTTCCAGGAGCTCTGCGGAGAACCCGAACACTTTTTCCGTCACTGTTTCGTCCATAACCTGTGCCCGCTGATGTTCATGGCCGAGTCGGGGAAGAACGTGACGCCCCCCGAGATGCCCGCCGAAGACCGCGCCACGCTGCTGAGCCACTGCGATGCCACGCTGTGCCAAGTGGTACGTGCCCTCGGCGTTTCCATGGTGATCGGAGTGGGCAAGGTGGCGGAGCAGCGAGCCCGACGCAGCCTCGCCGAAGCCGGAGTGGAAGtgaaggtggagggaatcatgcaCCCTTCACCCAGGAACCCGCTGGCCAATAAGGGCTGGGCTTCTGTGGCTCGAACCAAATTAGAGCAGATAGGGGTGTTGGGTTTGCTCACCAAGTGACTGAACACTTacagaatgtttttatttgtatatattgttttatataaagTACACTACACTCA

Function

GO: NA

KEGG:

id description
K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368906 lncRNA upstream 12139 20882446 ~ 20884841 (+) True G311486
TU368910 lncRNA upstream 43465 20807858 ~ 20853515 (+) False znf740a
TU368909 lncRNA upstream 53525 20842278 ~ 20843455 (+) True G311489
TU368938 lncRNA upstream 92056 20767078 ~ 20804924 (+) True G311508
TU368929 lncRNA upstream 114620 20781762 ~ 20782360 (+) True G311505
TU368908 lncRNA downstream 1901 20903312 ~ 20937881 (+) True G311488
TU368902 lncRNA downstream 25592 20927003 ~ 20983511 (+) True G311482
TU368903 lncRNA downstream 31267 20932678 ~ 20943629 (+) True G311483
TU369035 lncRNA downstream 46910 20948321 ~ 20951538 (+) True G311591
TU369043 lncRNA downstream 66304 20967715 ~ 20968865 (+) True G311599
XM_034314334.1 mRNA upstream 18573 20870652 ~ 20878407 (+) True hnrnpa1a
XM_034314162.1 mRNA upstream 36253 20831856 ~ 20860727 (+) False znf740a
XM_034314335.1 mRNA downstream 131712 21033123 ~ 21046577 (+) True calcoco1b
XM_034314468.1 mRNA downstream 212023 21113434 ~ 21135134 (+) True LOC113537842
XM_034314469.1 mRNA downstream 212023 21113434 ~ 21135134 (+) False LOC113537842
XM_034314489.1 mRNA downstream 236398 21137809 ~ 21149284 (+) True faim2b
XM_034314304.1 mRNA downstream 309841 21211252 ~ 21371670 (+) True lrp1aa
XR_004580241.1 other upstream 14615 20870652 ~ 20882365 (+) False hnrnpa1a
TU368156 other upstream 1113067 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 1113067 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1379821 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1809174 19087025 ~ 19087806 (+) True G310681

Expression Profile