RNA id: XM_026932834.2


Basic Information

Item Value
RNA id XM_026932834.2
length 3952
RNA type mRNA
GC content 0.49
exon number 8
gene id si:ch211-112f3.4
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18790926 ~ 18803902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCGCGGTTCAAGAGTGGAACCTGTGCGCAGAAGTGACTGGGCGAGGCTCAGAGCGTGTACAAGTCCAGAGCTCCATCTCATCTGTCGGTCCTGCGGGCGGAGGCGGAATCTGGGGCTTCTTTAAGCGCGCGCATTGAATCCTCATTTCTTTTCCCATCCAAGGCTCCTGGGTTTATTAGTAACTCATTACGCGTTCGTCTGATGCTTTCCATTTCATCCTTCAAGAGCTGCGGTGTCACTCATTTCTCAGCAACCTGCGCGTGATTTTATAACGTTAAGCACCGCAAATGTCTCGAGCGTGTGCGGCACCGCAGCCGATTCGCGCCGCGCGCAAAACCGAGTGGCTCCGCTGCGCCCTCGCGCACCACTTCTGCCGTGAGTCCGGGGTCGAGAACGAGATCGTGGTGCTGGCCACCGGCATCGACCAGTACCTGCAGGAGGTCTTCCACCACCTCGCCTacgccagcagcagcagcagcagcagcgaccTGGTGTCCGCACAGGATTTCCGGCTGCTCTGCTCGGTTCTCGGTGTGAGCgcggaggaggatgaggacagAGCGCGCGAGGACCGGGACGTGTGCTCCGCGCTTCCCCCCGCGCTCACCTTCAGGGAGTTTCACTCGCGCCTCTGCGGTTTCTTCACCATCCGAGCGCGAGACGCACCGACATCCGCGCGCCTTCCGGTCACCGAGGAAACGGAGCACGTGGAGCGCGAGATCAGGCTCCGGTGGCCGCGCGTGCGGCGGAGAAAGTGCGTCAGCTTCGACTTGAGTCGGGACAGTGCTGCGAACAGGACATCACGCGACAGGACGGAAAACCTGAAAGTTTGCGCACCAGAATCCACGCAAGCAGGACAGCACAGTCAGCAGAGATCATGGCAGGAGCAGGTGGAGATGGAGAATGCCAGTCTGAGAGAGCTTGTGGAAGACCTGCGCTCGGCTCTCCAGAGCAGCGACGCTCGCTGCATGGCTCTCGAGGTGGCTCTGAGGAGGGAGCGTCTGTACTCACCTGGCAAAAGCTCTCCACAAATCACTGAAAGGCAAACCTGCTTTGCTGGCAGCGAGCCCAAACTGAGGCAAACCAAACAAACCAGGCTCACGAAGGACCTGCTCCGAGAGCTAGAGCTGATCCGTGCTTCACGTGACGGCCAGCTGGAGGAGGCGATGAGGTTCAACCAGAGGCTGGAGGAGGAGCTTATGTCGGCGTATGGCGAGGTCAGCAGGCTGGAGGAAACAGTGGCGAGGCTGAGAAGAGAGAGCGCTGAGATCAAGAGGAGAGCGGAGGAGGCGAGAGCGGCTCTCGCTGCAGGCCTGGCGAGGGTCAGAGACATGCAGGACCAGGCGCAGCAGGTCACGCCACTGCAGGAGAAAGTCCAAAACCTCGAGGCAGAACTGGAGACATTCAGATCTCGGTGCACCTGCAGGGCTGAACATGAGAGAGGACCCGGACCTCCAGTTGAGTCTGTGGAGCCCACAGCACGTGTGATTCCCACAGGCCGAGACGAGATGCTCATCAGAGGAGAGGAAGCCTTGCAGAGGGCAGTGGAGGGCCGGGCAGCCtcagatgaggaggaggaggtgagggTGAAGGAGGAAGGCCAGTGCTGTCTGCTGGAGGTGAAGCGACTTATTAACAAACTTCACAACTGTGCAAAGGGaTGTCAGAAGATGGCGTTGTGGCATCTGCTCCTGTCACAGAACTCGACAGGACATTATAGCAATCAGATCGGCTGCACCGGACCACCGGAGACAAAGACGAGGGGACGAAGGCACCCCATGCTTCTGGATGAGAAGAAAACAGATAAAAGAATCTCTCGGAGAACCCTGGGTAAAATCCTGCTGAACACGCTAGATCTGTGCAACACAAAAGGCCAAGAATCGATTCCCATCTTCCAGGTCGTGGACGCTCTTTGTCAGCAGCTGGTCTCCAGCgagctggtgtgtgtggagggagaCGTTACAACGTGGCGAGGTGTGAATCCGCATCACCAAAACACCACAAACTCCCTCCTCATCTCCTGCTGAGAGACTCGTCTACTTCATCCAGGGAAGTGGTGTGAACGAGTGAAGGCTTTGGGATGTTGATCAGAAGCTCAAGTCCCAGAGTCTTTGAGGAAGATACTTAAATCCTTAGAGTGTGACTTGCTTTGgttaaaagcatcagccaaatgagtgaatgtaaatgtaaatctgtgtGTATAATCTGTATCTAATCAGTTTCTCGGAATTATATGTAAGATTAAAAGAACCTCATCCTAGAAGAAAAAACATATTGTCTCACTATCTAATGAAAACATAGTGGTtgccattaaaatattttcccaTCAGGATCTAATCGTTTTTCCAGGATTCAGTTACAGATCCATATCCGTGTATTATGGTAACGCCTTACTCACAAATGACCACTGATCCATGccggaaaaagaaaaacaaatatcgGAATACTCTTAATTGGAATTGTCGTAAACATCTTCCCATCAGGATCTAATTATTTTCATGGTTTCCAAAACGTTTTTATTCCGTTGCATGTGCATGATGTCGAGTGTGTATTACGTAATTAAAGGAGTGATTTTCTTAATTGCACGGCAGATTGCGTTGccgcatcacagctccaggatcccagGTTCAAACACAGGGAATCTCAGactctccctgtgtccatgttgGTTTCATAAGGATTCTCTGCTTTCATCCGAACatccaaaaacataccagtaggtggactggtgaaCTTTGAATGAGTGTGAGCCATCAATAGATATACATCGCATCTAGGGTGTGTTGTCACCTCGTGCCTGGTGTGTTCCTGGAATAAACTCCaggatactgaagatgagtgcTTTCAGCTCATTAAAACAATCACCATTAGAGACCATTGGTTTACTAGAGGATGCATTTGGATTCCATTAGAAAACCATCAGACATATCTAGAATGTGTCACAACTGTTAAGGTTTCCATTACATAATCCAAACTGACTTAATGGTTTCCATCAGATTCGTATAAATTTCTAGTTACTATTAAATACCACTAGAACCCAATTCAGTGCACGATTCCAtcagaataaaatcaaatcagcCATCAGGAACCATTAGGAATGATACACATTCCATTAAATTACCATTCCAGACCATTAGGAACCACTACAACTCCCTGCTTTCAGTATGACGTCACTAAAGTTAATCCTCAAGCCTGGTATGCAGTATATCATGCTTTACAGGTTACTCTAAGTCACAGAATGGAATGTGTGCTTAAAATGTTTCAGATCTGAGCCTCTTGCTACGATGTCAAGCACGGTGGGAAATCTCCATACAGAAcattttatattcttaggtCTGAAGattgttttttgtgttaaaaagcAATTTCTAGAggtgccaataattctggagttgagtGTATGTTCTGCCCTTGTTTAGCACACTGGCGAGGGACGTTTCGACACATCTGTGTGAGAACAATGAAGGTCAGTCATTTTCCCAGAgcctgcctctgtctctctcataagAGTGTTTTGTTCATGACCCCACAGGACACTCGGGTCCAAACGTCTCCACGTTCCTCCACATATCTATTTATTACACATCTCAGTCTTAACCGTTCCCTAAGCTGTGTTTCGAGTCTGTCCGTTACGTCTGTGCatcagtttttatttctgatgatTCTTCTCTCCCTCTATAGAGCTATGTGACatttatgataaaatgatattcATGATGAAGTGCCTGCAAAACAGTAGCAAGCACCCATGTCCTTAAGTGTTCTTAATTTAAATAGTCTACCTTTATACATACTACATTGTCTTGCTTTTGAATTGGCATGGTTGTAGATTTTAGGCTACAAACATTATAAAGCAGCAGATATTTCAAGGTGTAAGATCAGTCCTAACCCATTAGGGAGTTAGTTTAAAAGTATGTTGGTTTggactcttttttctttttacttcaaTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367666 lncRNA upstream 158982 18631715 ~ 18631944 (+) True G310425
TU367662 lncRNA upstream 173925 18616690 ~ 18617001 (+) True G310421
TU367661 lncRNA upstream 175272 18613515 ~ 18615654 (+) True G310420
TU367657 lncRNA upstream 188346 18602378 ~ 18602580 (+) True G310416
XR_003403812.2 lncRNA upstream 189202 18596516 ~ 18601724 (+) True LOC113538055
TU367817 lncRNA downstream 96358 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA downstream 100927 18904829 ~ 18906623 (+) False G310547
XR_004580273.1 lncRNA downstream 110392 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA downstream 110392 18914294 ~ 18959567 (+) False LOC117599928
TU367933 lncRNA downstream 256433 19060335 ~ 19066486 (+) True G310649
XM_034314325.1 mRNA upstream 49369 18708742 ~ 18741557 (+) True LOC113537968
XM_026932735.2 mRNA upstream 49369 18708742 ~ 18741557 (+) False LOC113537968
XM_034314326.1 mRNA upstream 49369 18715221 ~ 18741557 (+) False LOC113537968
XM_026932736.2 mRNA upstream 49369 18715221 ~ 18741557 (+) False LOC113537968
XM_026932730.2 mRNA upstream 49369 18722845 ~ 18741557 (+) False LOC113537968
XM_034314408.1 mRNA downstream 169060 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA downstream 176095 18979997 ~ 19037668 (+) False cdk18
XM_026932563.2 mRNA downstream 238680 19042582 ~ 19058802 (+) False mfsd4aa
XM_026932561.2 mRNA downstream 238683 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932959.2 mRNA downstream 534030 19337932 ~ 19343063 (+) True c20h1orf50
TU367680 other upstream 98912 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 98912 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1527263 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2289242 16489361 ~ 16501684 (+) False amigo3
TU367971 other downstream 283123 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 704353 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 965088 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 965088 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 2066750 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile