RNA id: XM_034314062.1


Basic Information

Item Value
RNA id XM_034314062.1
length 2979
RNA type mRNA
GC content 0.41
exon number 2
gene id si:ch211-266k22.6
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18553402 ~ 18558681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGCGCGGCACACAAGCCGCACGTCCACATCCAACATCTGGATTAGGGCGCGTGCACCGATAATAATTACAGTCTACATTTGTCGGGAAATGAGCTCGTGCGGGCTGAATAGAAAATTATATCCTACACGGTGACTAATTAAGCTCGCGTGTCTCATTACGGATAGATGATCTGGTCAGGGATGAATTATTTATCGCAGGTAAACAAGGTCCGATCTACAACAGAGTGATGACAGGAAATGGTGATTAATGGTGGGGTGTTGTAGACAgcacccccaaacacacacacacacacacacacacatacgcctGTCAGTATTTAAGCAAACGCGCTCCGACCGCGCGCGCGCGCGTCTGTGCGTTATAGCGCACGGTTATAGCTATGATATGAACAGGTTCTTACAGCTGGAGAGACATCAGTGCAATGATGGGGACAGTGCTGCAGGAGAGGACTCGACACAATGACCACAATCATCTCCCGACATGCAATAACCGAGCAAAGAGGAAAGCTTCAGGATCCTCCTCAAGTCATCCAAGAGAGATCCTGAGCAAGCCAAAGTACAAGGTGTCCTCCATAAAAAATCATCCACTGGACAGACGCTACAGACAGAACACATGGCAAAGCAGCGAAAAAGATACAATGCCATCTCGCCTTCCTCCTGTCCCTGCGCCAAGACACGAGTCGACTGATCGAGTGACACACGAGGACACGGACAGCGGCAGCGACCTTTCAGACACGGAGAGGCTCCCACAGCCTGCGTTCACCGCTGCTCCTCCGCTGCTTCACCTACGAGAAGAAGTCATCCATCCCTCCGACTTCCAACCTTCACGTGCTCTGTCTAGGTCACACGCCGTCTCCCGTGACAGCTACCCTGACTTCTTGCCTCCGCCATTTAACTCCTGGAGTCTCCGAGAGCTGGCAGTGTATTTAAACACGGACGGGAAAAACGTCCCTCGCTCGAGACCTGTCAACCAGTTCGAGAGATACCTGGACCGACTTCTGCAGCTAGAATGGCAGCAAATCCTGACGCTCCACGAGGAGAGCAGCAAGTCCACGTGGATTGTACGGCGTAGACTGCATTCCAGCCTCAGCGCCCCGAAAAGCATCCTGCAGTGCCAGCGTGCCTTCCCCTTCACCTTACTATCTTCTGTCCATCCACAAAGCTGCAACCGTTACTCATTCTCCGTAAGCACGTACCCTCACCACTCGCGTCCGCTGACGGAAAAAAGTGGATTTTCTAGGAGGAGCAGCAGCGAGACTCGGGCTAATGGTCTCAACAGACTCAGCGATTCTTCCTTGGACCATCTGAAACGCATGCAGGCTATCGGGAACATCCGTAACCCGCCAACACACAATCCTCATGTCAACGGTCCTGCAGGTGTAGATCCTCTGAGGAGAAAGAGCTCAGGGGGAAGGAGCCGCTCCTGTGAGGACGAGAGCAAAGCTGGTTGTAGAAGAGCAAGACCTGAGAGAAGAACAGAAGCTGGCCGTGAAATAGACTCAAAATCATTAGGTGCGACCGGTTCTGAGAAAGAACCAGTGGTTGGAAGGACTGCTGCGAAACACAAGCATGTcgagtttgtttttcagaaacgAGAAATGACACGAAAGTTCTTCACTTCCTAAGAATGTTCTAGGAACCATCTCTGGTACACATTACGgtttagaaaataaacattCCAGCAATTTAATATGGAGATACAAACTCCAGCAACTGTACTAGAACCCTTAAACCAAGGTTCTTCAGTTTTCCCCTTTGGTGGAACCTTTAAAGATTCTATGAAACAGAGCGTTTGCCTCTTTTCCGAACTGCATGAAGAACCCCCAGAGGAACACCTTCTCTAACAGTACaggattaaaatataaaaagaaactaTTTCTGTCTATAATTGGCAAGTTGTGGAAGCtaatttctttatataaatgttattttactcTCATACAGAACAGGGTTTCAAAAAAGGTCTATGGTTGGATAAGGGTTCTTCGCTTCATAAATGGGTTCTAGGACATATCTAATAGGAAAACTTTGTTCAAGTGTTCGACATAGAACCTACATTTAACGGTTCCCCCtagagttacaaaaaaaaatgctttgggGTTCTAGATTACTGCTGATTATTTACTTTGagataattatttttgattaatAAATTTCATCTGCATTCGTTGTATTTCTCAACCAAAACCTAAAGAAATCAAGACTGTTACTGTTTGTGGTTtactttactgttattttaaacatcgttaattttctgcatttatttatttatttatttaaaaattattattatttttttttattttaaagttaaatcaGTATTTAAGAGTACACACAAAATTATACACAGTCCAAATTTATACAAATCGAAATTACAGATTACAGTTTTACAGATATAATttcaagaaaatatttttttaattggtgtaaattagtgtttttttttttcctgagtacTAAACAGAATACTGTTATCATGTAAATCACAAATGTTCACGGTTACTAAATCATAATCTTCTCCCCATACCATAAATaatctccttttctttttacagCGTATTATCTTTAATAATCTTGTGGTTGCTGTTCTGTTTACATACAGTCAGTGCaagtttactttatttaaaaaaataaataaattatagtaTCTGTATCATTTAGTGTGATACGTTTAATATTACTTTACTATACctaaatattgtttaaatatatCTGTTGTTGTCTTCCATTATTCgaatatttcttatatttaacATAATGTGGAGGTCAGAGACTATTCTTTATGGGGAGCAAATATCAAAGTTTTGagcaatatttattatttaaaatcctctgttaaaatattgaatatattttttcagagtTGCGATAAAAAACTTAAGGAACTCTAAACATTCCAATAAGTCACTTTATCTCACTGTAGCACACTGTATTTATACCTCTGCACAagaacaaatgtattttttttttattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367378 lncRNA upstream 82378 18467803 ~ 18471024 (+) True G310183
TU367413 lncRNA upstream 108368 18444085 ~ 18445034 (+) True G310208
TU367402 lncRNA upstream 122812 18427425 ~ 18430590 (+) True G310201
TU367268 lncRNA upstream 431147 18122030 ~ 18122255 (+) True G310084
TU367179 lncRNA upstream 509888 18040882 ~ 18043514 (+) True G310007
XR_003403812.2 lncRNA downstream 37835 18596516 ~ 18601724 (+) True LOC113538055
TU367657 lncRNA downstream 43697 18602378 ~ 18602580 (+) True G310416
TU367661 lncRNA downstream 54834 18613515 ~ 18615654 (+) True G310420
TU367662 lncRNA downstream 58009 18616690 ~ 18617001 (+) True G310421
TU367666 lncRNA downstream 73034 18631715 ~ 18631944 (+) True G310425
XM_026932440.2 mRNA upstream 12676 18477084 ~ 18540726 (+) True phactr3b
XM_026932441.2 mRNA upstream 12676 18501272 ~ 18540726 (+) False phactr3b
XM_026932847.2 mRNA upstream 98482 18453810 ~ 18454920 (+) True si:ch73-303b9.1
XM_026932965.2 mRNA upstream 126215 18420459 ~ 18427187 (+) True ghrh
XM_026932712.2 mRNA upstream 143842 18403538 ~ 18409560 (+) True LOC113537956
XM_026932780.2 mRNA downstream 1341 18560022 ~ 18564811 (+) True pdrg1
XM_026932410.2 mRNA downstream 78912 18637593 ~ 18645518 (+) True hp1bp3
XM_026932543.2 mRNA downstream 88030 18646711 ~ 18654039 (+) False sh2d5
XM_026932545.2 mRNA downstream 88063 18646744 ~ 18654039 (+) False sh2d5
XM_034314340.1 mRNA downstream 88097 18646778 ~ 18654039 (+) True sh2d5
TU366607 other upstream 1289739 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2051718 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 2059263 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 4032255 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 4077017 14370788 ~ 14476385 (+) False asic1b
TU367680 other downstream 128716 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 128772 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 528344 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 949574 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 1210309 19768990 ~ 19783913 (+) False vamp3

Expression Profile