RNA id: XM_026932884.2


Basic Information

Item Value
RNA id XM_026932884.2
length 1535
RNA type mRNA
GC content 0.43
exon number 4
gene id c20h1orf158
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17380999 ~ 17387719 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCCTGACGGAACTCCTGATGTAACGTAAAGTATTTGGGAAATCGCAAACCAAATACTTTTTACCATCAGAAAATCATGTTccaacaaacagtgaaataaaataataaaatccaataaaataCAGTGGGTGGGTAGAAAGAAAGGCTATATCGTAGTTTATTTcgaaaaattacacatttttaaacgaTGATCTATTTTGGTCTGTCCTCTCATTTAAGGCGTTGGTGTGCAGTACAAGCCTTGCAGACGAAGCCTCATTTCTAAATTCAAAGTGATATTCATCATGAGGAATCTGAGCTTCTTTCTTAATGAGTgtttaccgtttctatagtaacacacccctccctcctcccccCTGCTGTGACAGCTGCTATCATTTTGCTTCTCCATCCGAATGTAAATGTGCCAGAGTTTCTGTTGCATGAGGACACGGTGAAGTTGCATTATGCAGGAAAAGGACATGGCGTATGATAAATGGAAGCAGCCGGGCTGGAGGATTGAGCAGAAATACTCCAACAAAGTGCTCATAGGCAACTGGGCCGAGGAGAGACTGCAGttcTCTCGGGAGTGTAAGACAGCAAACAGCAGTAATAGGCTGGACTTCAGGCCTCAGACAGATCACAGGCCGGATGTGATTGTGAGACGGACAGCGCTGCGTCGATCTGAGGGTCTTCCCACCAGACTCCTCTTCTCCCACCATAACACACCCACCTCACATTACCTGGTCACTCTATATGACGAGTCTTATGGTCGACGTAGCTCCCCTGGCCTTCCCGAGCTCCGCACATGGCACACTGACAAGATGGGTTGGGTCCCTGAGAAGTCAGACCTTCCGCTTCATGGCCCTCCGACCAACTACGGTCTGACAGAGCTTTGGCGAGCGCAGCTGGAGAAGCAGCGGGCGGGGTCGCACATGCTCAGTATGTACAGAGCGGCGTATCCAGTGCACCCCACAGATGCATTCTGTCAACCTCGGCATGCCAGAGTGCCACGCCTGACCTCCATCAGAAAGAATGACCTGGAAATAAACCACATGCCAGGAAATGCTGCTAGACCAATGTCACCCCTGCCATGTGTGTAACCCTGTCtttatcatatttattgttCGGAAAAATGcacatatatatcatattagTTATTCTAAATAGCATCTATATACAtcttaataaagaaaaagatattgtaaatattgtccatgctgttatttaacactTACCTTTCCTGGGATACAATTTTGAGAATATCTAGACTAGATTTTGAGTTTTAAAGTACAGCCATTAATAAGTACAGTttggagttactgctaccaccagCAGGAAGAtggacgttgattattttcacatcctgaagtgttttatttctcttataccacagcaatttaccagcgATTACCAACAAACTGTTCACATATcacacattttaaccatttatttttacgtttaatgttgtggaacgtctttGAGAaaagatagttcctgttattatgtacagtatgttatagCATCTGTAAACAAGTCTTTTCACTTACGagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU366620 lncRNA upstream 103167 17276456 ~ 17277832 (+) True LOC117599872
XR_004580174.1 lncRNA upstream 103431 17276440 ~ 17277568 (+) False LOC117599872
TU366592 lncRNA upstream 132924 17244700 ~ 17248075 (+) True G309461
TU366593 lncRNA upstream 132924 17244700 ~ 17248075 (+) False G309461
TU366466 lncRNA upstream 196461 17172262 ~ 17184538 (+) True G309389
TU367096 lncRNA downstream 531817 17919536 ~ 18018096 (+) True G309933
TU367138 lncRNA downstream 576705 17964424 ~ 18058167 (+) True G309970
TU367149 lncRNA downstream 588896 17976615 ~ 17977091 (+) True G309981
TU367098 lncRNA downstream 624134 18011853 ~ 18018096 (+) False G309933
TU367176 lncRNA downstream 653163 18040882 ~ 18043514 (+) False G310007
XM_026932674.2 mRNA upstream 71 17376959 ~ 17380928 (+) True aadacl4
XM_026932831.2 mRNA upstream 62342 17297720 ~ 17318657 (+) True lrrc38b
XM_026932533.1 mRNA upstream 117540 17260979 ~ 17263459 (+) False LOC113537865
XM_026932910.2 mRNA upstream 200320 17179622 ~ 17180679 (+) True LOC113538082
XM_026932887.2 mRNA upstream 210995 17169010 ~ 17170004 (+) True her15.2
XM_026932567.2 mRNA downstream 637922 18025641 ~ 18028630 (+) True LOC113537884
XM_034314083.1 mRNA downstream 642474 18030193 ~ 18034462 (+) True rnf207a
XM_026932844.2 mRNA downstream 642481 18030200 ~ 18034462 (+) False rnf207a
XM_026932846.2 mRNA downstream 715118 18102837 ~ 18118319 (+) True rap1ab
XM_034314421.1 mRNA downstream 715123 18102842 ~ 18118319 (+) False rap1ab
TU366607 other upstream 117336 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 879315 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 886860 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 2859852 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 2904614 14370788 ~ 14476385 (+) False asic1b
TU367680 other downstream 1299678 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 1299734 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 1699306 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 2120536 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 2381271 19768990 ~ 19783913 (+) False vamp3

Expression Profile