RNA id: XM_026932898.2


Basic Information

Item Value
RNA id XM_026932898.2
length 3081
RNA type mRNA
GC content 0.52
exon number 16
gene id mcm2
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14616988 ~ 14628607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTCGCGGGCTTTTTGGTCACGTGTCTGATTTCGCGCGAAAACTTTGTCTCGCcggaggaaaaaagaaacagtagtCTGAAGTGAAGAGGCTTGAGCACTACGCGGTATAATGGCGGATTCCTCAGAGTCTTTCAACATGGCCACGAGCCCGAGTCGCGGCTCAAGGCGTGGTGATCTGACCTCCAGCCCAGGCAGAGACCTGCCTCCCTTCGAAGACGAGTCTGAGGGACTGCTGGGGGACAATGGACCtgaagatgaggaggaagatGGAGAGGAGCTGTTCGGGAACCAGATGGAGGGGGACTACCGTGCTATTCCTGAACTAGATCGCTATGAGGCCGAAGGTCTGGATGAGGAGGATGTGAGTGAACTGTCTCCTGGAGCTCGTGCTCGTGCCGAGGCAGCCATGAATGACAGGGACAAAAGAATGGGCATGGGCCGCATGCCGAGGGGACTGCTCTATGACagtgaagatgaggatgatgagcgGCCATCAAAGAGACGACGGCGCCTGGCAGAGCGTGCTGCAGAAGGAGCTGGTGCTGAAGGCGAGGATGAGGAGATGATTGAGAGTATTGAGAACCTGGAGGATATGAAGGGTCACTCGGTGCGGGAGTGGGTATCCATGGCTGCCCCACGCCTGGAGATCTATCACCGCTTCAAGAACTTTCTGCGCACACATGTGGATGAGCACGGCCACAATGTATTCAAGGAGAGGATTAGCGACATGTGTAAAGAAAACAAAGAGAGCTTGTTGGTGAACTACGAGGAGCTGGCGTCCAGAGAGCATGTACTGGCTTACTTTCTCCCTGAGGCACCTGCTGAGATGCTGAAGATCTTTGATGAAGCTGCAAAAGAGGTGGTGCTCGCCATGTACCCCAAATATGATCGCATAGCCCATGAGATCCATGTGCGTATTGGCAACCTGCCTCTAGTGGAGGAGCTGCGCTCGCTCAGGCAGCTGCATCTGAACCAGCTGATCCGTACCAGTGGTGTGGTAACCAGCTGTACAGGAGTGCTGCCCCAGCTCGGCATGGTCAAATACAACTGTAACAAGTGTAACTTCATCCTGGGCCCCTTTTTCCAATCACAGAACCAGGAAGTGAAGCCGGGCTCATGTCCAGAATGTCAGTCTCTTGGTCCGTTTGAAATCAACATGGAGCAGACAGTGTATCAGAACTACCAGCGCATCACCATCCAGGAGAGTCCTGGAAAAGTAGCGGCTGGCCGTCTGCCCCGGTCCAAGGACGCCATCCTTCTGGCTGACCTGGTAGACAGCTGCAAGCCTGGAGATGAAATTGAGCTGACAGGCATCTACCACAACAACTACGATGGCTCTCTGAACATGGCCAACGGCTTTCCTGTTTTTGCCACTGTGATCCTGGCCAATCACATCATGCGGAAAGATGAGCGAGTGGCCGTGGCAGAGCTCACTGATGAGGACGTGAAGGCCATTGTGGCTCTGTCCAAGGACGAGCGCATCGGGGAGAGGaTATTTGCCAGCATTGGACCCTCTATCTACGGCCACGAAGATATCAAGAGAGGTCTGGCTCTTGCGCTGTTTGGTGGCGAGTCGAAGAATCCAGGTGGAAAGCATAAAGTACGTGGTGACATCAACGTGCTGATGTGTGGGGATCCAGGCACAGCCAAGTCCCAATTCCTGAAGTATGTGGAGAAGGTGGCGAGCCGGGCGGTGTTCACAACGGGACAGGGTGCCTCAGCGGTGGGTCTCACAGCCTATGTCCAGAGACACCCGGTTACCCGTGAGTGGACGTTAGAGGCGGGGGCTTTGGTCTTAGCAGACCGAGGAGTCTGTCTTATTGATGAGTTTGATAAGATGAACGATCAGGACAGGACTAGTATCCATGAAGCGATGGAGCAGCAGAGTATCTCCATCTCCAAAGCTGGCATTGTCACATCCCTGCAGGCCCGCTGCACTGTAATCGCTGCTGCTAACCCAATCGGTGGCCGATATGACCCGTCCCTCACATTTTCGGAGAATGTGGACCTGACAGAGCCCATCGTGTCTCGTTTTGACATCTTGTGTGTTGTAAGAGACACTGTCGATCCTGTGCAGGATGAGATGCTTGCACGCTTCGTGGTGGGCAGCCACATAAAGCATCACCCCAGCAATAAGGAAGGGGGCATGGCCAGCCTGGAGGAAATAGTGCTCCCCAACTCATCAGATGTGCCGCCCATTCCTCAAGAGCTGCTCAGGAAGTATATCATCTATGCCAAGGAGCGTGTACACCCCAAACTGAACCAGATGGACCAGGACAAGGTGGCACGCATCTACAGCGACCTCCGCAAGGAATCCATGGCTACGGGCAGCATCCCGATTACGGTGCGTCACATTGAATCGATGATCCGAATGGCAGAGGCTCATGCACGTATGCACCTCCGTGACTACGTACAGGAAGACGATGTCAACATGGCTATACGCGTCATGCTTGAGAGCTTTATCGACACACAGAAGTTCAGTGTGATGAGGAGCATGAGAAAGACGTTTGCACGCTACCTGGCTTTCAGGCGAGACAACaatgagctgctgctgtttatCCTGAAGCAACTGGTGGCCGAGCAGGTGTCCTACCAGCGCAACCGCTACGGAGTGCAGCAGGACGTCATCGAGATCCCAGAGAAAGACCTGGTGGACAAGGCTCGACAGATCAACATCCACAGCTTGTCTGCGTTTTATGACAGTGACTTGTTCCTCTCCAACAAGTTCTCCCATGATGCAAAGAAGAAGCTGATCATGCAGCAGTTCTGAGCCATGTGCCGCATATGGATTGTGTTTCAGAATCTTGTGGAcgtgtaaatatttttctgtatcgCCACTTGGCGTGGAAATGGATGAGTTCTGATATGGACAGAGTCATTTGATCATTCAGGGAAACGCCACACTTTGATCGTGGTCATGTTTGCTTGTTCTTGTTGTAAGACAGGTGgtatcaatatttttttctattgtcaaatgcagaaatgttctGGATGTGTAGAATTGGACATTGTGAAAAGATGTGTACCATGTTCTAAAAAATTGTCAAATAAAAATAGATGTTTACTGACCCTCAAATTA

Function

GO:

id name namespace
GO:0006270 DNA replication initiation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K02540 MCM2; DNA replication licensing factor MCM2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364909 lncRNA upstream 18376 14598393 ~ 14598612 (+) True G307976
XR_004580186.1 lncRNA upstream 26167 14583567 ~ 14590821 (+) True LOC117599878
TU364901 lncRNA upstream 27756 14589025 ~ 14589232 (+) True G307971
TU364494 lncRNA upstream 468543 14148141 ~ 14148445 (+) True G307588
TU364114 lncRNA upstream 520202 14096270 ~ 14096786 (+) True G307281
TU364930 lncRNA downstream 71390 14699997 ~ 14780758 (+) True G307997
XR_003403804.2 lncRNA downstream 132224 14760831 ~ 14763174 (+) True LOC113537908
TU364954 lncRNA downstream 170366 14798973 ~ 14800142 (+) True G308018
XR_003403808.2 lncRNA downstream 765002 15393609 ~ 15407641 (+) True LOC113537967
TU365380 lncRNA downstream 783492 15412099 ~ 15413822 (+) True G308404
XM_026932763.2 mRNA upstream 1094 14613763 ~ 14615894 (+) True ccdc51
XM_026932966.2 mRNA upstream 6824 14599257 ~ 14610164 (+) True LOC113538112
XM_026932967.2 mRNA upstream 6824 14599283 ~ 14610164 (+) False LOC113538112
XM_026932968.2 mRNA upstream 6824 14599365 ~ 14610164 (+) False LOC113538112
XM_026932527.2 mRNA upstream 37640 14576334 ~ 14579348 (+) True LOC113537860
XM_034313991.1 mRNA downstream 1923 14630530 ~ 14661741 (+) False podxl2
XM_034313990.1 mRNA downstream 1987 14630594 ~ 14661741 (+) True podxl2
XM_026932457.2 mRNA downstream 45883 14674490 ~ 14680861 (+) True LOC113537808
XM_026932459.2 mRNA downstream 47183 14675790 ~ 14680861 (+) False LOC113537808
XM_026932608.2 mRNA downstream 136579 14765186 ~ 14789849 (+) True slc6a6b
TU364869 other upstream 95841 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 140603 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 2154452 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 3101175 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 3135888 11480669 ~ 11481100 (+) True G305955
XR_004580181.1 other downstream 1860754 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 1860754 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 2632372 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 4058790 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 4058846 18687453 ~ 18692014 (+) False snrpe

Expression Profile