RNA id: XM_034314397.1


Basic Information

Item Value
RNA id XM_034314397.1
length 5477
RNA type mRNA
GC content 0.45
exon number 30
gene id timeless
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12496309 ~ 12527278 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGGGTAGCCTGTAGAACGCGCGCGcgtgtataatatacagttttGCGCGCGAGATATTCTGTAAACTCGACCTGTTTGTCAGCTAAGCTACGGAAGGGTTATGGCGCTACAAATAACTAATAATTGTCCTTAAAAATTCGGCGGTGCCTCAGAAGTAAACGTTATAAACAAAAAGGAAGGCTGTTCTTTAGAGATATAGTGTTTAAAAGTTAGTTCGTTTTACTGAGCCACTTGTCTGAGGTAAGTTGTAATTCAGAGCTAAATGCTAACTCTGTATTCAGCGAGGCTGCGGTTCTGCTCAACTAGCAGCTTGAGCCTGACTTTCCCCGGGTGAAGCGCAGTGCTGTGCGGATCTGTGCACGATGAACTGTGAGCTGTTGGCCACATGCAGTGCTCTCGGCTATTTGGAGGGGGATAAATACCACAAAGAGCCTGACTGCTTGGAGAGTGTAAAAGACCTGATTCGCTACCTGAGGCATGAGGATGAGACAAGGGACGTCAGACAGCAGCTGGGAGCTGGCCAGATCCTCCAGAATGACCTTTTACCTATCATAACACAGCATGGACAGGACAAGCCTCTGTTTGATGCCTGCATCAGGCTCATGGTGAACTTGACCCAGCCTGCACTTCTCTGCTTTGGAAAAATCCCAAGTGACGCCACATTCCGACACCATTTCCTTCAAGTGGTGACTTATCTACAAGGATATAAGGAGGCGTTTGCCAATGAGAAAGTGTTTACAGTCCTGAGTGAGACGCTGTATAATCTGCTGCAGCTGGATTGGGAACAGAGACAGGAGGAAGATAACTTGCTGATTGAGAGAATTTTGCTGCTTATCAGGAATGTGCTGCATGTCCCTGCTGACCCCACTGAGGAAAAGAATGTGGATGATGATGCCAGtgtacatgacaagctgctgtGGGCGATCCATATGAGCGGGATGGATGACCTGCTGAAGTTCCTGGCCAGTGCACAAAGTGAACAGCTGTGGAGCATGCATGTGCTGGAGATCATCTCGCTCATGTTTAGAGATCAGactcctgagctgctggtgagtGCAGGACAGAGCCGCTCCACAcaggagaaacagaaagacacacaagAGCTAGAAGTTCTCAGACAGAAAGAGCAGGCAGAGAAACGGACCCGCACGCTACAGAGAGGAACCAGGCACTCACGTTTTCGAGGCTCATATGTAGTCCAGGGATTAAAGTCTATTGGTGAGAAGGATGTCATTTTCCACCAAGGACTCCACAATttTAAGAACTATTCTCATGACTCTGGGAAGGCTGTGAGGCGTGTGCCCAAGCGTAAACAGACGGCTCGAGACACTGAGACCCAGCGCCGCTCTGTCCTGAACGTGCGGATCTTCCTGCGCGAATTCTGCATAGACTTTCTGGAGAACTGCTACAATAGACTTATGTACCTTGTCAAGGAGTCATTAATTCGTGAACAGGGCCAGCAGCATGATGAGACTTATTACCTGTGGAGTCTGAACTTCTTCATGGCCTTTAACCGCGGCAATGGCTGCAGGCCTGAGCTGGTCTCTGAGACACTCTCCATCCGTACTTTCCACTTCATAGAGAAGAACATCACCAACTACTATGAGATGATGCTCACTGACCGCAAAGAGGCTACATCATGGTCTCGCAGGATGCATTTGGCTTTGAAGGCCTATCAAGAACTCTTGATGACTTTAAATGAAATGGATCGCTCTAAAGATGAGAACATCCGCCAGAGTGCAAATGTTATAAAGAGTAATATCTTCTATCTGATGGAgttcagggagattttcctcaccCTCTTGCGGAAATTTGATGAGAGAATGCAGCCACGCTCCTTTCTGCGTGATCTGGTAGAATCCACGCATCTGTTTTTGCGAATGCTCGAACGTTTCTGCAAGGGCCGAAACAATCTGCTTGTGCAGaaaaagaagacaaaaaggaaaaagaagaaaaagaatttaaCTGAACAGGTAGAGAATACTCCAGAAGCACtggaggaaacatggcaaaTCGTGTCTCAGGAGCTCAGGGCCTCTGGCTTTCAGTTATCAGAAGCTCTGCGAGAAGGTGCTGTGCCCTTTGATGCTACTTCTGAAGTTCCTGTTACTGAGCAGCGGACTGAAGCCATGATTCGTATTCAAGATGCTTTGCTCGCCCGCACTGGGCCAGAAGCACTCGGGTTACTACGGGCTGCACGTGAGGTGTGGCCAGAGGGAGACGTGTTTGGTTCTGCTGAGGTAGAACCTGAAGAAGAGCTTGATCTTCTGAAGCAGATTCTCTTCGCTGAACTTCCCAGACCAGCTCAGGCAGAGCCTGCAATGGACGAGGATGATGAAGGGGCAGAACTAGATGAGGAAGAAGAACTGGAGACTGTGCGCGTATCTGAAACGGAGTTCAGCTTTTTGGATTTTATCAAGAGgTTTGCAAGCCCAAACGTTGTTCAGCCATATTTGGTGTTGCTGCGCTCCTACtcaaaaaacacaccacataCCAACCACTGCATTGCCCGCATGCTTTACCGTATTGCTGTGGACCTGAAGATGGATGCTTTGCTTTTCCAGCTTTCTGTCTTCCACCTCTTCAATAAAATCTTCACTGACCCTGCTGCCTCAGCCTATAAGGAGCTGGTTACGTTTGCCAAGTATGTTGTGAACCGGttcttctctctcactgccCAGAATAGCAAAGCCTTCATCGAGCTACTTTTCTGGAAGAATGTTGGCACTGTGAGACAGATGACTGAGGGCTACAGTGcagatgaTGATGGTGCTCAGAAAAAAGCCAAATGGACAgcagaggatgaagaggagctTCGACGGGTATATGAAGAATATAAGGATTCTGGAGTTCCTGACATTGTGGAGACCCTTCTGCCATTGCTCAGCACAGACCGCACCAGACGACAGGTTGTGATCCAAATGGTGTCTATGGGTTTGGTGGACAGCGTAAAGAACCTGAAGAAAGACAGAAAAGGTACTCATATTGTGCTCTGGACTGAGGAGCAGGAACAGGAGCTGCAGATGCTCTTTGAGGAATACAAGGATTCTGATGATGTGCTGGGAAATATACTGAAGCGCCTGACTGCTAAACGCTCAAGAGCACGAGTCATGGATAAAATCATCAGCATGGGCCTGGTTTCTGAGCGCAAAGATCTGTATAAGAAACGACAACGTGGTACTGCTGGGAAAAGCCGGGGAATGACTGAGGAGGTCTTTTTTGCTGACCTGAGTGGAGAACCCAGAGATGATATGATTCACATGGAtgaggaagaaaatgaagaattggaggaagaagatgatgatgatgatgaagaagaaaaagaagagattaGACCTGTCCGAGAAAGGAAAGTCAACAGGCGAGAGagtgttttggaaaaaaacCTCAGTGTGGGATCTATGGCTCAGAGCTTACGGGGAGAAGGCATGTCAGGGCCGATCTTGTGGCTTCAGAACTGCCTGAACAGAGCAGCAGATGATCGGGAAGAAGATGGTGTTTCTCACCCTGTGGCACTGGTTCCTCTGACAGAGGAGAACGAAGATGCCATGGAGAACAAAAAATTTCAAAGGCTTCTTCGCAAAGTTGGCATCCGTGCACCAGCTGATGAACAGGAGTCTTTCTGGAGGATCCCTGCAACTATGAGCATCTATCAGCTACGGTCAATTGCGGCATCTTTAGACCAGGCAGAGGAAAGCGAGGTCACAGTTCAAGAGGAAACTGATGCAGGGATGACAGTGAATCCTGAATTGGCACAGAACAACGAGGAAGGCCATGACTTACAGGAGCTCAGAGCTCAGGCGCTTCGAGCCCTGCTGCTGGCTCGCCAGAGGAAGCATTCCTCTGAAGACACAAAAAAAGATTCTTTTGATGTGGAGGCCACTTCTGAAAGTGGAGCACAAAGTGCTGCTGCTGTTGAAGGTAAAACATCAGGGAAGAGGAGTCGTGTGTtggacagtgatgatgatgatgaggatgagacaGGTGAGGCCTCTCCTTCTAGAATGAACGTTGAAACTGAGGGAGGCAATCAGTCAGACGAGGAAACTCGCTCTGCTCCTGCTAAGCGAAGGCGCCACAGGGTGCTGAGTGATGACGAGGAAGACGACTAGAAGCTTTGAATTTGGACCAGCCAGCCACCCCCCAAGCACTCCCACCACCaactgcagaaacacacacaaacaccaacccCAACAAAATCAGTGACTCCATTCAACCAGTTCACATTACAGTCCACTTTTGCACACGTTTGAACAATTtaaaacttttgtttgtttgagctACTTTGGGTTTTATGTCTGGAGTAAAGCAAAAGTGTGGGCCTGATGCTGCAGATGTAAACAGCTTGGTAATCTTCACGTAAATCAGATTTAGATATTGCTTCTTGAAAGGAAGACGTGGTCTGAAGGAAACATCTAAATATAAGGACTGTTTTCTTTGCTGAGAATATCCACAAGCTGTTTGGAGGTGCAGTTTTTGTACATATAAAATTGTTTCTAGAACGATAATAATTTAGAATTGGGATTCTTGATGGTGTCTTAATTTCAGACTTTGGAAATGTTGGTGGCCACATTTGAGCTCCACCCTCTAGCCTCAACAGAACCATGCAGCTCTGCCCCAGAACACATTCAACGCATTCACATGCACATGTACTATCTGGACTTCAGCAAGTGTAAAGGTTTAATACATTCATGTCATACAATTAGCACTATTCTACATCTCTACATTTTTCCTTGACTTGATTTCATATCCTTGTTTTGCCTCAAGAATTACCACTCTGGGCAGCAGAATCTTTGTTGCAATAAATAATTGTCCCTGGTTTGGTGCTGGTTATAAAAATGGTTAGTGCTTTTGTTTTCAGATTGTGTTCTGTCACTGTGGGATAGATTATGCTACGGTCTGCATCTGTTGAATAAagtttgattaaataaatataatttacaaattGTGTACCTAATCATACCATAAAATTTGGACAGTCATTTACAGTAGTGAAATGAACCGGTGTAATGTTTTTGACCCTGGCTAACTGAATTTTCCTGGTTTTCTGAAGAAACATTGCAGGCCTAAAATCATGATCAACGTTGTACGGAAGGCCTGAACcacaaaatgtgaaattaagtgctatgtcattattttaatttgttatttttacttaactacttattttgacttaatatcttaTTATTTAGACTTAACATGTTATTTCACaattctcattattttgactgaaTAACTATTTTGACTTTGATATCTTATTTCCACTTACTCATTACTGTGATTTAGTAAGTCAAAGTAACAAGTAATTAACTggttatttcaacttaatatgTCATTGTGATTTGATAGCTTACATCAGGTTGCTGTCTTGTAATTTTGACTTAAATTGTTAACTTAGTTTAAACTATTAtctcattatatttttatacattatacattttttgctttaattaaaatatctCACAATAAGACGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG:

id description
K03155 TIMELESS; timeless

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363205 lncRNA upstream 47935 12437199 ~ 12448374 (+) True G306479
TU363193 lncRNA upstream 200580 12295369 ~ 12295729 (+) True G306470
TU363175 lncRNA upstream 206552 12284951 ~ 12289757 (+) True G306452
TU363151 lncRNA upstream 341759 12154295 ~ 12154550 (+) True G306433
TU363147 lncRNA upstream 344140 12143548 ~ 12152169 (+) True G306432
TU363232 lncRNA downstream 45144 12572422 ~ 12573759 (+) True G306503
TU363513 lncRNA downstream 270470 12797748 ~ 12797982 (+) True G306744
TU363525 lncRNA downstream 376930 12904208 ~ 12904841 (+) True G306756
TU363733 lncRNA downstream 669197 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 761511 13288789 ~ 13293439 (+) True G306937
XM_026932892.2 mRNA upstream 10334 12474056 ~ 12485975 (+) True prph
XM_026932875.2 mRNA upstream 41988 12434509 ~ 12454321 (+) True suox
XM_026932874.2 mRNA upstream 41988 12434512 ~ 12454321 (+) False suox
XM_026932997.2 mRNA upstream 69276 12417610 ~ 12427033 (+) True mcrs1
XM_034314296.1 mRNA upstream 83214 12265705 ~ 12413095 (+) False ephb2b
XM_026932943.2 mRNA downstream 5958 12533236 ~ 12562741 (+) True LOC113538096
XM_026932942.2 mRNA downstream 5961 12533239 ~ 12562229 (+) False LOC113538096
XM_026932786.2 mRNA downstream 57847 12585125 ~ 12595797 (+) True pmela
XM_026932417.2 mRNA downstream 71791 12599069 ~ 12606053 (+) True cdk2
XM_026932919.2 mRNA downstream 81075 12608353 ~ 12626608 (+) True sarnp
TU363207 other upstream 33773 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 980496 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1015209 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1169949 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1180873 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1843510 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1987332 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3962083 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3962083 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 4733701 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile