RNA id: XM_026932903.2


Basic Information

Item Value
RNA id XM_026932903.2
length 4262
RNA type mRNA
GC content 0.37
exon number 10
gene id si:ch73-267c23.10
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20633750 ~ 20650173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAAAGCGAAGCTCCCTCGCGCGCGCTCTCACTGCAGGACCAATCAGGAGCGAGCTTTAGAAACTCTAATAGAAATAATTGAAGCTTTGTTGAGGATTTTGAGTTCGTGTAGGTGTTAAGAGAGATCAGACCCAAGATCAGACCCAAGATCTGACCCAGGATCAGACCCGGGATCTGACACGGTTCTGTGATCTCGCGTGCGCGCTGGAGGAGGATCATGGGAGCGACTTTGGGGACTTTCAGCCTCCTGAACTGGgctcCGTGTCTGTGTGGCTCGGCGACATGTTTGGCATGTCGATTTTGCTCGAAATGTAAGAACTCAATAGTGACTCGCATCATTTACGCCTCGATCCTGTTAATCGACACCATCATCGCCTGCATCATGCTGTCACCCAGCGTCGAGCACCAGATGAAACGGATCCCTGGATTTTGTGAAGACGGCATGACGTCCAGCAAGGCAGGAGTTTTTCAGTGTGAGACTTTTGTGGGCTACAAAGCTGTGTATCGTCTTTGCTTTGGCATGAGCATGAGCTTCTTGGccttttttctgctcaccatcaACATAAAGAGCAGCAGAGACCCTCGAGCTGCAATTCACAACGGcTGCTGGTTTCTCAAAATCGCAGTCATTATCGCGCTCACTGTCGGCGCCTTTTACATTCCAGAGGGACAATTTTCCTACATTTGGTTCATGGTGGGTGCATTTGGAGCgttcttcttcatcctcatccaGCTGATCCTCCTCGTGGACTTTGTGCACTCGTTGAGCGAGTCGTGGCATGACAAGAAGGAAAACGAGAACGCAAAGCTGTGGGGTTGTGccttgGTGAGTGTAACGTTACTGAACTACTCTCTGTCGATCACCGCCATCACACTCATGTGGATTTTTTACGCTCAGCCTGTGGAGTGTGTACTCAACAGGTTCTTCATCAGCTTCAACCTCATACTGTGCTTCATAGCTTCAGTGATCTCCATTCAGAAGAAAGTTCATAAACGTCTTCCCGCTTCTGGACTCATGCAGTCGTCCTTCATCACTCTGTACACCATGTACCTCACCTGGTCAGCCGTGACAAACGAACCAGAAAAATTGTGCAATCCCAGCCTGCTGAGCTTTTTCCAGCAGGTCGCCAATCCCAATATCTCTTCAACAAACCAAACCATCGTCGACCCCCCAGAGCATCCTTATTTCTTATGGGAGGATACGCAAAGCATCGTGGGATTGTTACTGTTTGTCTTGTGCCTTTTATACTCGAGCATTCGCTCGTCCAGCACCAGTCAGGTGAACAAACTCCTGCTGACTCCTCCAGAAGCCGTGCTGATAGAAGACTGTTCCACAGGAAGCCTCGGAGTCTCAGAGGGTCCGAGACGAGTGATAGATAACGAGAGAGACAGCGTGCAGTACAGCTACTCGTTCTTTCACTTCCAGCTCTTCCTCGCGTCGCTCTACATCATGATGACGCTCACAAACTGGTACAGGCCTGATGCTAACTACAgagacatcacacacaagcGAGGACCAGTTTGGGTGAAAATCTCGTCCAGTTGGGCTTGTCTCTTCCTCTACGTCATGACTCTGATCGCTCCCATCATCTTCAAAAACAGAGACTTTCCATAGCCACTTTATCGCAACTGATTTAACGTAACGCTTTTACTCTTATATggttttaaatcatgtttttttttttaagattttttctgacacattttactgttttttctgttacagttttcagtgttaaagaaatattgtgaattttctctcattttcttaaGATGTTTTATGTCAATTTTTTCTTAcaagattttacattttagcaATATTATCACTTTTTCACTCCAGAGATTTTACAtatcatttgtaaaatattatgacaattttttaaaaaacattttacgtTTTTCTCTTGAAGGTTTAATGTAAAGTTGAAAAAATATCGTGACAatttttatataactttatataaaaactcgacattttgtcatgtttttcttaCGGGATTTTACTTAtggtttaaattttaattttcttgagTTTGACAAACATAATGACAATTTTTGCACCAGacaatttgtcatgtttttttcttatgagCGTTTATGTAAAGTTTGAGAAACAgtgataatttttttcttaataagtTTTATATCACAGTTTTTATCAGGATTTATGTAACGTTTGAGAAATATTGTGACAATTTTTATGAGATTTTCTTACATTTCTATTTTCCTCTATTGTGAGATTTTACataaaaagtttgagaaataacgttacaatttttttcttaagacATGTTGCGTCATATTTTCACCTTACAAAACTTTATGGAAAGTTTGAGAAATATTGTGGCAAGGTTTTCGTAAGACGTTTTACATGACCCTTTTGTGAGGTTTTAAGTAACTTTTGAGAAATGCATTTTTTCCTAAAGTGTTTTGCGTAGGTTTTTCACCTACAATATTTTGCATTAGTTTtctttaaagacattttatataacagtttcCTGTTAGGAGATTTTATTTAGagttttatcttttaaaaaattctttaagAGATGTATCATATTTCACATAtcatttttacttattattttttgtgtaaGAGATTTTATGTAGCTTGTTTCGTTACTCATGTCTGGACCTTTTACAGTTGAAACATAGTCGTGACTAAAACCGTCCTTTTTTACGCATATTTTTACCTGGACGTCTTCACACTGGAAATATAGACATGACCACAGAAATATGGAACAAAATATTGCCTTTAGTAGTAACAAacagaaatcatttttttaaaatgtttttgtttttagcgtCTATTTTACTGACGTAGCACTTTTTCTCTCGTTGTTATTCTTGTGCCATTATTGCgtattgttttaaatgaaatgtttatcttggacgggggaaaaaaaacacaaacggATGTTAAAAAGCTTTTCAGAAAGCTAAATAcgtttttacacttttactgaAAAATTTTGTCACTAAATgacatgctgttgtttttgACTACTTTTCAATATTACGCTGACTTCATGTCAGAATGTCGAGATGTAATTACGAGACGACGATCCTGAGATGTTGTGAGatatctacacactcaggagtgAACTGTTtccttaatatttaatatttaatattttaaggaCACCAAAATGGGTACATAATGGGCCGTTATAATAGCTAGTAGgtagctaaaaaaaattttttttaaatcttctattgctgttttttttaaggctCAATTCTGCACAGAACTAAACTAACCTGCACTACACTCTtaatgatgatgtcattagAGGAACGCGTAATGAAATGTATAGAGTTAAAGATTCCTGACGTTACACGTCCTTTAGCGTCAGTCGGCGCTGCTGTTTTTTCGCTTCTTTATGTTTTCAAACGGTGCTCGCGAGTTTGATGATGTAAACGTTCTTTACGCTAGCTGAATTTGTACTTATTGTCGTCGTGGCGTGACGTGATGTGACATGAATGCGCTAGAAATGACGTCATAATATCGTATTACATGTAATTCTGGAGTGATGTAATAATTATGGACTGTATGTTACGTTTGTGTCTCGCTCactgaacaaacacaaaacaaaatatatacgTATTTTATTTGCTTTCCATTTATCGTAGTGTAAAACTGACCGTTTTATAAACACTTCACTTAAactgttaacatttttattttttttaaacacttgtCCAATAtttgaaccacacacacattctataaAACCAAATCAATAAATTCTAAAgtaaaaaagtctttttttaaaatgaaatccttCTTTAATTATtccaggtcttttttttttttttttaatttttacttcaTCATGACTTTTTTCTTAACTAGACCAACAGCTCTTTCAGAttcctctttcatttcttttatctGATCTGTAatagtcaaataaaaaaattatattggtTTAAGTAATAATTGTATTCTTCATAATACTTAGACAATGTGTAATTATGCACCTTTTCCCCCTCATACAACTGACTCGTATATTTAcactaattaatatttttatttatttcatacttgcttttttatttgtttaattcaggcacaaacaaaactgtaaatacacaattaattttttgtgaataatttcCATACCAAAGCCTTTTGAgttctttatttaacattatttgtaaacgACTCTTTATCAGACAATGTTGTTCAAGTTGCTTTTTTATAAATTGTGGCAAAAGTGAtttgcttttttctgttttaagtctgttttttctcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368841 lncRNA upstream 50155 20579953 ~ 20583595 (+) True G311444
TU368860 lncRNA upstream 89197 20544021 ~ 20544553 (+) True G311460
TU368880 lncRNA upstream 111942 20519861 ~ 20521808 (+) True G311471
TU368843 lncRNA upstream 158063 20473896 ~ 20475687 (+) True G311446
TU368844 lncRNA upstream 159953 20472823 ~ 20473797 (+) True G311447
TU368953 lncRNA downstream 12595 20662768 ~ 20665745 (+) True G311515
TU368955 lncRNA downstream 16094 20666267 ~ 20668273 (+) True G311516
TU368936 lncRNA downstream 32658 20682831 ~ 20685069 (+) True G311507
TU368933 lncRNA downstream 34994 20685167 ~ 20690740 (+) True G311506
TU368938 lncRNA downstream 116905 20767078 ~ 20804924 (+) True G311508
XM_026932496.2 mRNA upstream 12511 20618291 ~ 20621239 (+) True LOC113537838
XM_026932980.2 mRNA upstream 30686 20596752 ~ 20603064 (+) True LOC113538122
XM_034314145.1 mRNA upstream 57390 20546892 ~ 20576360 (+) True ankrd52b
XM_026932618.2 mRNA upstream 95118 20534127 ~ 20538632 (+) True cnpy2
XM_026932419.2 mRNA upstream 126566 20495896 ~ 20507184 (+) True nab2
XM_026932838.2 mRNA downstream 4012 20654185 ~ 20661689 (+) True slc2a10
XM_026932837.2 mRNA downstream 4012 20654185 ~ 20661689 (+) False slc2a10
XM_034314152.1 mRNA downstream 181683 20831856 ~ 20860727 (+) True znf740a
XM_034314156.1 mRNA downstream 181683 20831856 ~ 20860727 (+) False znf740a
XM_034314164.1 mRNA downstream 181683 20831856 ~ 20860727 (+) False znf740a
TU368156 other upstream 849837 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 849837 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1116591 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1545944 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1941736 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 220479 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile