RNA id: XM_034314385.1


Basic Information

Item Value
RNA id XM_034314385.1
length 2002
RNA type mRNA
GC content 0.42
exon number 2
gene id hrh1
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13140570 ~ 13161692 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCATATTGTTGACGAGGGGAGAATCAGGTCACTGAGGATCTGAAATAGTGTAAAAGCTCAGTTTGTTCTGCATGCGCTCTACAGGTGGCAGCTGGAGTTTGGAGgaaTTCACTTATGGAAATATCGATGAATGACCATTGGGTGGATACCATTATCCAGACTTTTGACATCAGGTGACAATACTAGAATACTCCAATGGAGACTAAGACGGGCGGTGAAGTCAATAAAATCCTGCAAGACCATGCCAGCTTAAATTTTACAACCTATTTAAATGCATCTCTTTCCCTCCACCATCATGTGAACAATGCAGTGCTGGGGATAATTCTGGGCATGTTGTGTCTCCTGACAACCATCATGAACATTCTGGTTCTTCTTGCTGTGAGGAAGGAACGTACTTTACATACCGTGGGGAACCTTTATATCGTCAGCCTCTCTTTAGCAGATCTAATAGTTGGGGCAACTGTAATGCCACTAAACCTTGTCTATCTACTTGAGGATGAATGGAAACTTGGTCGTGTGGTTTGTCAGTTCTGGTTGGTAATGGATTATGTAGCTAGCACGGCCTCaattttcagtttgtttatcCTTTGCCTGGACAGATATCAGTCTGTTAGGCACCCACTGAGGTATCTGAAATATCGAACACGGGGAAGAGCGACACTGATGATTTGTTTTGCTTGGCTTCTCTCCATGATGTGGATTATTCCCATTTTGGGATGGAGGATGTTTGCTAATGTTGATCGGAAACCTGAGCTAGAAAGCAAGTGCGACACGGACTTCCGCTTCGTCACATGGTTTAAAGTGCTGACCGCCATTCTCAACTTTTACATCCCATCATTCCTGATGCTATGGTTCTATTCGCAAATTTTCATAGCTGTGCGAGAACATTACAAGCAATGGGAGAGTGTCACTATTGCTAAGGTGGTGGCAGATGAAGGCATAAATGTGCAAAGTTTAAAACATCAGAGAACATTCTGTAAAATGGCAGAGGAAGAGAATCTGGCCTTGCAGACTTACTCTCAAAAGGAAGGTATATTGGATCAGTATACTTTGGAGCAGCCATACAACTCAAGGGACACCAATGAGGAGAACGGTGAATCCCTGGGTGAtaaaaaatccaaacacagGAAAACCTCATTTTTTAAGATTACAAAACCTAAGAAGAAAACTGTGAGGGATCCCCGTGAGGTTTCATCAGTAAACCAGGAGGTAAATTCTGAAACACCTTCAAAGGATCCATCTATACCTCTGGGCATTTTGCAACATGAAGAAGATGCAGATCTCAAAATGTTTGTATCTGTTACTGACTGTAATGTATTAGTGCCAAATTCGGTTGCTAATATTTGTGAGGTAACACCCAACACTGACGTTCACAAACACATCACCATTCTCTGTAACGATGATGCTAATGCACAGTCACCTGTATCGCAAGGGTCATGGATGCACGACGATGGGCCAATGATAGACGGTAGCAACACTATGACTTTGAGGCAAACATGGCAGAAATTCTGCGAACAGTCCAAGCAGTGTGTCCAGAACATGCGCGTTCATAAAGAACGGAAAGCGGTGAGGCAGTTGGGCTTCATCATCGGAGCTTTTTTGGTGTGCTGGATCCCGTATTTTATCACCTTCATGGTCATGGCGCTGTGCAACACATGCGTCCATCATGACCTCCACATGTTCACTATATGGTTGGGCTACATCAACTCCACTCTGAACCCCTTTATTTATCCTCTTTGCAATGAGAATTTCAAAAGAGTATTTAAAAAGATCTTTCGTATCAAGCAGTGATTTTTGTCTGTAAAGAGTGAATGTGTAGCAGCTGCGTATGTCTATGTAAACATAGTTATTTTGCctttatgtgtgtaaatgtgtatttttaaggGTTGTAGACTTTGTTTGGATTATTATGATATTAAACACCTATGTTAATTGGCTTATATCTTTGGTGCTAGCCAGTGTTATTGTATGCTTGTAATCTGCATCAGATTAAGGCATCAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0065008 regulation of biological quality biological_process
GO:0008015 blood circulation biological_process
GO:0003018 vascular process in circulatory system biological_process
GO:0016020 membrane cellular_component
GO:0004969 histamine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363525 lncRNA upstream 235880 12904208 ~ 12904841 (+) True G306756
TU363513 lncRNA upstream 342739 12797748 ~ 12797982 (+) True G306744
TU363232 lncRNA upstream 566962 12572422 ~ 12573759 (+) True G306503
TU363205 lncRNA upstream 692347 12437199 ~ 12448374 (+) True G306479
TU363193 lncRNA upstream 844992 12295369 ~ 12295729 (+) True G306470
TU363733 lncRNA downstream 34783 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 127097 13288789 ~ 13293439 (+) True G306937
TU363757 lncRNA downstream 169995 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA downstream 171114 13332806 ~ 13333248 (+) True G306961
TU363884 lncRNA downstream 188761 13350453 ~ 13350680 (+) True G307079
XM_026932778.2 mRNA upstream 66963 13059983 ~ 13073758 (+) True slc6a1b
XM_034314478.1 mRNA upstream 69329 13059983 ~ 13071392 (+) False slc6a1b
XM_034314479.1 mRNA upstream 69329 13060192 ~ 13071392 (+) False slc6a1b
XM_026932776.2 mRNA upstream 129662 12975527 ~ 13011059 (+) True slc6a11b
XM_026932429.2 mRNA upstream 181615 12848117 ~ 12959106 (+) False atp2b2
XM_034314075.1 mRNA downstream 5463 13167155 ~ 13279101 (+) True atg7
XM_026932625.2 mRNA downstream 197232 13358924 ~ 13425482 (+) True syn2b
XM_026932671.2 mRNA downstream 278967 13440659 ~ 13476589 (+) True pparg
XM_026932670.2 mRNA downstream 286755 13448447 ~ 13476589 (+) False pparg
XM_026932669.2 mRNA downstream 288671 13450363 ~ 13476589 (+) False pparg
TU363207 other upstream 678185 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1624908 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1659621 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1814361 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1825285 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1209096 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1352918 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3327669 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3327669 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 4099287 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile